Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00430 ATGGTTCATTCTGATCAGTGCTCACGAAACCCTTCTTCCTCCCAAACCAAGAAAACCAAAACCCTCTTCTTGATCTCTCTGCTCCTCTTTTCCTCTTTCTTCATCATCAACTCCGCACTTTCCCTCTTTGACGCGCACAACTCCAACGACGCTGTTGGCGCCGCGCTCCAATTACAAGTCCTCCCCATCGCGTTCGTCTTCCTCTTCTACTCCCTCCTCCCTCTCCTCAGCCTCAGCTTCACCCTCCCCTCTCCGCTCCTAACCCTCATCGGCGCCTTCGCCTTTGCCAAAGAGTTTCTCTTGTTCTATCTCCAGCGAAAGGACCCCAGCGGCGTCGAGAATCACTACTACAATCTCTTGTTGGTGTCAATTGCCGTAAATAAACCCGTCTTCGAAGTAACAAGCAAGATACAAGACAATGAAGAACCTTTCATAGAGTTGAACAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTCCCTTCTGATCATGCATCAAGGGAGAGAAGGGAAGGTTTCAACTTTTCTGTTAACCAATCTCCACCTAAGAGCCAAGGGGGAGAAGCTTCTCAATTCTCCTTTATGCATCCAATCAATACTGGTGATGATAGCACCCTTTCTTCACCAATTCCACAATATGGGCAAATAAGCAATTCTTGCTTGATTGAGACTCAGGACCCATCCCTACAGCCTTTAAATCAAGGAGGAAATGGGAGAAAAAGACATTATAGAGGAGTTAGGCAGAGACCGTGGGGCAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCTGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGCTCCAAAGCCAAGCTCAATTTCCCTGAACATGTTCTTCTTCCTCCTCCTCCAATATCATCATCATCACCACCTTGCAATAATAATAATAATCATCATAGTTATTATTATGGTTCTTCAGCTCTTGCACCTCTTGCACCACCACCACAACATGTTTATGATCAAACACCACCACCACAACAACAACCCTTGCTATCATCATCAGCACAAGAAGAAGGGTTTCCAAATCTAATGCAGTACGCGCAGCTTCTTTGGAGTAGGGATGATGATGATCTACAGCGTATTGCTTCAGGCCTTCATCAACATCATCATCACAATGAGGCTTTTTATGATTCAAGTTCTTCAACTTTGTTCTCATCAACTTCCACTACTTATTCTATGACTGTGTCTGATCAACAGCAGAATATTGGAGATGACACGAGTACTCCCAAGGGGGCAGAATATAATTATGGTGGCTGCTTTTTTAGAGGGAGTGATTTTCATGACAAGAATTGA 1362 0.4581 MVHSDQCSRNPSSSQTKKTKTLFLISLLLFSSFFIINSALSLFDAHNSNDAVGAALQLQVLPIAFVFLFYSLLPLLSLSFTLPSPLLTLIGAFAFAKEFLLFYLQRKDPSGVENHYYNLLLVSIAVNKPVFEVTSKIQDNEEPFIELNKVDRRHGKRPLPSDHASRERREGFNFSVNQSPPKSQGGEASQFSFMHPINTGDDSTLSSPIPQYGQISNSCLIETQDPSLQPLNQGGNGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLLPPPPISSSSPPCNNNNNHHSYYYGSSALAPLAPPPQHVYDQTPPPQQQPLLSSSAQEEGFPNLMQYAQLLWSRDDDDLQRIASGLHQHHHHNEAFYDSSSSTLFSSTSTTYSMTVSDQQQNIGDDTSTPKGAEYNYGGCFFRGSDFHDKN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00430 453 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 201 437 - -
Gma16g00430 453 PANTHER DNA-BINDING DOMAIN 201 437 IPR044808 GO:0003700|GO:0009873
Gma16g00430 453 MobiDBLite consensus disorder prediction 171 189 - -
Gma16g00430 453 CDD AP2 241 300 IPR001471 GO:0003700|GO:0006355
Gma16g00430 453 Gene3D AP2/ERF domain 240 300 IPR036955 GO:0003700|GO:0006355
Gma16g00430 453 MobiDBLite consensus disorder prediction 151 189 - -
Gma16g00430 453 Pfam AP2 domain 241 290 IPR001471 GO:0003700|GO:0006355
Gma16g00430 453 SUPERFAMILY DNA-binding domain 241 299 IPR016177 GO:0003677
Gma16g00430 453 MobiDBLite consensus disorder prediction 151 170 - -
Gma16g00430 453 Pfam Family of unknown function (DUF716) 86 126 IPR006904 -
Gma16g00430 453 SMART rav1_2 241 304 IPR001471 GO:0003700|GO:0006355
Gma16g00430 453 PRINTS Ethylene responsive element binding protein signature 264 280 IPR001471 GO:0003700|GO:0006355
Gma16g00430 453 PRINTS Ethylene responsive element binding protein signature 242 253 IPR001471 GO:0003700|GO:0006355
Gma16g00430 453 ProSiteProfiles AP2/ERF domain profile. 241 298 IPR001471 GO:0003700|GO:0006355
Gma16g00430 453 MobiDBLite consensus disorder prediction 335 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00430 Gma-Chr16 4586155 4590176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00430 224 303 AP2-EREBP Transcription Factor Family AT5G61890 79.518 4.29e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma16g00430 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00430 - - gmx:106797385 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00430 16 4586155 4590176 Gma16g01476 16 34013840 34016131 PCT
Gma16g00430 16 4586155 4590176 Gma02g00722 02 6952675 6954960 PCT
Gma16g01349 16 32442694 32444874 Gma16g00430 16 4586155 4590176 PCT
Gma02g00593 02 5919809 5921967 Gma16g00430 16 4586155 4590176 PCT