Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00427 ATGGAtcttctttttcttcattccctcttcttcttcttcttcttcttcACTTCAAATGACGCAAATGCCCTCGATGCCACTATTCCTCGCGACGCATTGTCCCTTCTCAGCTTCAAACGCTTCGTCTCTTCCGACCCTTCCAACCTCCTCGCCGCCTGGTCCAACCGCACTTCCCCGAATCTCTGCCGCTGGCGCGCCGTCGCGTGCGGCGTCGCCGGCAGAGTCACCGTCCTCAACGTGACCGGCCTCCGCGGCGGCGAGCTATCGCCCTCCGTCGGCGACATGTCCGAGCTCCGCGTCCTGTCCCTCGCCGGAAACATGTTCTCCGGTGAGATTCCGGTGACCTTGGTGAATCTCCAGTTTCTCGAGGTTCTTGAGCTTCAAGGTAACAACTTTTCAGGGAAAATCCCCACCCAGATGAGTTTTACTTTTCTTCAAGTTGTTAACCTCTCCGGTAATGCCTTCTCCGGTTCGATACCGAGTGAAATTATTGGCTCTGGGAATGTAAAAATCGTTGATTTATCCAATAATCAGTTTTCTGGTGTGATTCCTGTGAATGGTAGTTGTGATTCCTTAAAGCATTTGAGGTTGTCGCTTAACTTTTTGACTGGGGAGATTCCACCCCAAATTGGGGAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAATATCTTGGAGGGTAGAATCCCTTCTGAGATTGGCCATATTGTTGAACTTAGAGTTCTAGATGTTTCTAGAAACTCCCTCACTGGAAGGGTCCCCAAGGAGTTGGCTAATTGTGTTAAACTGTCTGTGCTTGTGCTCACTGATTTGTTCGAGGATCGCGACGAGGGAGGCTTGGAGGATGGGTTTAGAGGAGAGTTTAATGCCTTTGTTGGGAACATACCTCACCAAGTGTTGCTGCTTTCGAGTCTGAGGGTTTTGTGGGCGCCAAGGGCCAACCTTGGTGGACGGTTGCCTAGTGGCTGGTCGGATTTGTGCTCTCTGAGGGTGCTCAATTTGGCGCAGAATTATGTTGCCGGTGTTGTTCCAGAGAGTTTGGGGATGTGTAGGAATTTAAGTTTCTTGGACTTGAGTTCTAACATTTTGGTGGGGTATCTGCCTTCATTGCAGCTTCGGGTTCCTTGTATGATGTACTTCAATATCAGCAGGAATAATATATCTGGCACTCTTCAAGGGTTTAGGAATGAAAGCTGTGGTGCAAGTGCACTGGATGCTTCATTCCTAGAGTTGAATGGTTTTAATGTCTGGAGGTTTCAAAAGAATGCTCTCATTGGATCTGGTTTTGAAGAGACCAACACTGTTGTTGTTAGCCATGATTTCAGTTGGAACAGTTTCAGTGGATCCTTACCTTTGTTTTCTCTTGGAGATAATCTGTCTGGTGCAAATCGTAATGTCTCCTACACTCTGTCTCTCAATAATAACAAGTTCAATGGAACTCTACTGTATCAGTTAGTTTCAAACTGTAATGACCTCAAGACATTGTCAGTTAACTTGAGTCTGAACCAACTATCCAGTGGGAATTTCCAGGCATCATTTTGGGGGTGCCGGAAGTTGATAGATTTTGAAGCCGCATACAACCAGATTGATGGGTCAATTGGACCTGGTATAGGAGACTTGATGATGCTTCAGCGTCTTGATTTAAGTGGGAACAAACTATCTGGATCACTGCCTAGTCAGTTGGGAAACCTACAAAACATGAAATGGATGCTTTTGGGAGGAAACAATCTAACCGGGGAAATTCCTTCCCAACTTGGCCTGTTGACTTCCCTTGCTGTTTTAAATCTGTCTCGCAATGCTCTAGTTGGAACAATTCCTGTGAGTTTGTCAAATGCCAAAAATCTTGAAACACTGTTGCTAGATCACAACAACCTTTCCGGGGAAATACCATTAACTTTTTCTACTCTTGCCAATCTTGCTCAACTGGATGTTTCTTTTAACAATCTTTCTGGTCATATTCCTCATCTTCAACACCCAAGTGTTTGTGATTCCTATAAAGGAAATGCACACCTGCACTCTTGCCCTGATCCATATTCTGACTCACCTGCTTCTCTTCCATTCCCCCTTGAAATCCAGCGTACGCATAAACGGTGGAAATTAAGGACAATGGTTATTGCTGTGGTCACGTCTGCTTCTGTGACTCTCTGCACACTTCTGGTAATAGTATTGGTGATCTTTTCTCGAAGGAGTAAATTTGGTCGTCTTAGCAGTATTAGAAGGCGACAGGTAGTGACCTTTCAAGATGTTCCAACTGAATTGAATTATGACACTGTAGTCACAGCTACTGGAAATTTCAGCATCCGGTATCTAATTGGCACAGGTGGCTTTGGGTCAACGTACAAGGCAGAGCTGTCCCCAGGTTTTCTTGTTGCCATAAAGAGGTTGTCCATAGGTAGATTTCAGGGCATTCAACAGTTTGAAACAGAAATAAGGACATTAGGCAGAATTCGACACAAAAATCTTGTGACTCTTGTTGGCTATTACGTAGGAAAGGCTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGGAACCTTGAAGCCTTCATACATGACAGCAATGGAATGCTGCTTTTGGTTTCCATCAAAATACTTGACTTAGATGATTTGCAAAATGTTGCAGCTTCAGCAACTGCAAAGCTCTTATCATGA 2655 0.4433 MDLLFLHSLFFFFFFFTSNDANALDATIPRDALSLLSFKRFVSSDPSNLLAAWSNRTSPNLCRWRAVACGVAGRVTVLNVTGLRGGELSPSVGDMSELRVLSLAGNMFSGEIPVTLVNLQFLEVLELQGNNFSGKIPTQMSFTFLQVVNLSGNAFSGSIPSEIIGSGNVKIVDLSNNQFSGVIPVNGSCDSLKHLRLSLNFLTGEIPPQIGECRNLRTLLVDGNILEGRIPSEIGHIVELRVLDVSRNSLTGRVPKELANCVKLSVLVLTDLFEDRDEGGLEDGFRGEFNAFVGNIPHQVLLLSSLRVLWAPRANLGGRLPSGWSDLCSLRVLNLAQNYVAGVVPESLGMCRNLSFLDLSSNILVGYLPSLQLRVPCMMYFNISRNNISGTLQGFRNESCGASALDASFLELNGFNVWRFQKNALIGSGFEETNTVVVSHDFSWNSFSGSLPLFSLGDNLSGANRNVSYTLSLNNNKFNGTLLYQLVSNCNDLKTLSVNLSLNQLSSGNFQASFWGCRKLIDFEAAYNQIDGSIGPGIGDLMMLQRLDLSGNKLSGSLPSQLGNLQNMKWMLLGGNNLTGEIPSQLGLLTSLAVLNLSRNALVGTIPVSLSNAKNLETLLLDHNNLSGEIPLTFSTLANLAQLDVSFNNLSGHIPHLQHPSVCDSYKGNAHLHSCPDPYSDSPASLPFPLEIQRTHKRWKLRTMVIAVVTSASVTLCTLLVIVLVIFSRRSKFGRLSSIRRRQVVTFQDVPTELNYDTVVTATGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLVGYYVGKAEMFLIYNYLSGGNLEAFIHDSNGMLLLVSIKILDLDDLQNVAASATAKLLS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00427 884 Gene3D Ribonuclease Inhibitor 27 84 IPR032675 -
Gma16g00427 884 Gene3D Ribonuclease Inhibitor 285 405 IPR032675 -
Gma16g00427 884 SUPERFAMILY Protein kinase-like (PK-like) 744 856 IPR011009 -
Gma16g00427 884 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 6 855 - -
Gma16g00427 884 Pfam Protein tyrosine and serine/threonine kinase 770 855 IPR001245 GO:0004672|GO:0006468
Gma16g00427 884 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Gma16g00427 884 ProSitePatterns Protein kinases ATP-binding region signature. 772 794 IPR017441 GO:0005524
Gma16g00427 884 PRINTS Leucine-rich repeat signature 544 557 - -
Gma16g00427 884 PRINTS Leucine-rich repeat signature 589 602 - -
Gma16g00427 884 SUPERFAMILY L domain-like 293 661 - -
Gma16g00427 884 ProSiteProfiles Protein kinase domain profile. 766 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00427 884 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 6 855 - -
Gma16g00427 884 Gene3D Ribonuclease Inhibitor 406 674 IPR032675 -
Gma16g00427 884 Gene3D Ribonuclease Inhibitor 85 272 IPR032675 -
Gma16g00427 884 SMART LRR_typ_2 327 350 IPR003591 -
Gma16g00427 884 SMART LRR_typ_2 237 261 IPR003591 -
Gma16g00427 884 SMART LRR_typ_2 589 613 IPR003591 -
Gma16g00427 884 SMART LRR_typ_2 541 565 IPR003591 -
Gma16g00427 884 SMART LRR_typ_2 95 119 IPR003591 -
Gma16g00427 884 SMART LRR_typ_2 142 166 IPR003591 -
Gma16g00427 884 Gene3D Phosphorylase Kinase; domain 1 729 841 - -
Gma16g00427 884 SUPERFAMILY RNI-like 81 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00427 Gma-Chr16 4554120 4557939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00427 16 853 Receptor kinase-like Gene Family AT3G02130 38.232 3.98e-164 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Gma16g00427 PK_Tyr_Ser-Thr 1.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00427 - - gmx:100795047 1636.31