Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00421 ATGGAAGCTGCTACATTTCCTCACCAACTTCAGGTGAAGCCATTCCACTTTTTCAAGATCATAACCGCTCAAAATCTGCAGGATGGAAAACTAATGATCCCAAATAAGTTTGTGGAGAAATATGGAGAAGGCTTACCAAATGCTCTATTTCTTAAGACTCCAAATGGTACTGAGTGGAACTTCAATCTGGAAAAGCATGATGGTAAAATATGGTTTCAAAAGGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTTTGGTTTTCAGACGCCATGGAACTTCCCATTTTCAGGTACACATCTTTGATCTGAGTTCCTTAGAGATAGATTACCCTTCTAAAGGTACAGAAGGTAAAACGTCCCCCAATCATGAAGGAAATAAACAACCTCGAAATGAAGAAAATTTGGAATATCTTCAACCATATCAAGTGAGAAGTCATAAAAGTGTTAAAGTTGAGAACATGATGACATTGCCAGAGGAGGCTCAGCCACATACCGACACAAAGTTCAAAGAAAAATCAAAGGTTGTTGTTGCTAACCAAGTTACAGCTCTTGACCTAGCAAGTTCTTTCAAACCTTGTAATCCATTCTTCTTAGTTGTCATGCGTCCATCGTACATCCAATCTAATGGCGGTCCTCTGCCTTTACAGACAAAGTTTTGTAGGAGACACTTTGGTTTGCTCAATAAGAGACATATCAACCTTCAGGTGTTAAATGGGAGAATTTGGCCTGCAAAGTATATGATCCAGAAAATGAAGAACAAAACAAATTTTAGACTAACAAGTGGATGGAAGACATTTGTCAAGGACAATAACTTGAAAGTTGGCAATGTTTGCACCTTTGAACTCATTGATGGAACTAAACTAACCTTACTGGTTCACATCTTCAGAGGGACAAATGGTTCAAATTGTTCAACATCTCAAGGAAAATCAAAGGCTAAGGCTAACCAAGTTACAGCTCTTGACAGAGCAAGTTCTTTCAAACCATGCAATCCATTCTTCTTGGTTGTCATGCGTCATTCATACATCCATTCTAATGTGTTATGTAAAGGAAAAGTTATTCTACTTCTACTCCTATAG 1092 0.3828 MEAATFPHQLQVKPFHFFKIITAQNLQDGKLMIPNKFVEKYGEGLPNALFLKTPNGTEWNFNLEKHDGKIWFQKGWKEFAEYHSLAHGHLLVFRRHGTSHFQVHIFDLSSLEIDYPSKGTEGKTSPNHEGNKQPRNEENLEYLQPYQVRSHKSVKVENMMTLPEEAQPHTDTKFKEKSKVVVANQVTALDLASSFKPCNPFFLVVMRPSYIQSNGGPLPLQTKFCRRHFGLLNKRHINLQVLNGRIWPAKYMIQKMKNKTNFRLTSGWKTFVKDNNLKVGNVCTFELIDGTKLTLLVHIFRGTNGSNCSTSQGKSKAKANQVTALDRASSFKPCNPFFLVVMRHSYIHSNVLCKGKVILLLLL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00421 363 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Gma16g00421 363 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Gma16g00421 363 Gene3D - 179 304 IPR015300 -
Gma16g00421 363 Gene3D - 10 110 IPR015300 -
Gma16g00421 363 CDD B3_DNA 200 301 IPR003340 GO:0003677
Gma16g00421 363 SMART B3_2 17 109 IPR003340 GO:0003677
Gma16g00421 363 SMART B3_2 202 303 IPR003340 GO:0003677
Gma16g00421 363 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 301 - -
Gma16g00421 363 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 313 351 - -
Gma16g00421 363 PANTHER B3 DOMAIN-CONTAINING 313 351 - -
Gma16g00421 363 PANTHER B3 DOMAIN-CONTAINING 10 301 - -
Gma16g00421 363 CDD B3_DNA 15 107 IPR003340 GO:0003677
Gma16g00421 363 SUPERFAMILY DNA-binding pseudobarrel domain 195 301 IPR015300 -
Gma16g00421 363 Pfam B3 DNA binding domain 202 302 IPR003340 GO:0003677
Gma16g00421 363 Pfam B3 DNA binding domain 17 107 IPR003340 GO:0003677
Gma16g00421 363 ProSiteProfiles B3 DNA-binding domain profile. 203 303 IPR003340 GO:0003677
Gma16g00421 363 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00421 Gma-Chr16 4498105 4501648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00421 13 306 B3 DNA Binding Superfamily AT3G18990 30.447 1.52e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma16g00421 B3 8.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00421 - - gmx:100793469 746.117