Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00419 ATGGTTATAGTGACAATCAATAGTGGTGTTAGTGACAGAGATGGTATTAGTGATGATTGTGGTGACAATGATAAAGGTGATATTGTTGATGGGGGTGACAATGACAGTGACGATGACATTGATGGTGGTAGCGCTGCCAATAGTAATGATATTGGTGACAATGATGATTGTGGTAGTAACAATGGTGACACTAATTATGGTAGTAGTGGTGATAATAGTAACAATGTTGATAGTGATAGTGATATCGGTAATGATGGTGGTGATGCTAGTGATACTAGTTATGACAGTGACAATGATGGGTTTTTAGCTCCCCCAATTTCTTCGCTCAACATGGTTCTTCAAAATGATATTGATTTGCTAAATCCTCCGGTTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTTCAGTCACCAAACTCTTTCTTCATGGATGTTAAGTGCCAGGGTTGCTTCAACATAACCACTGTCTTTAGCCACTCTCAGACTGTTGTTGTATGCGGAAACTGCCAGACTGTCTTGTGTCAACCAACCGGTGGCCGGGCAAGGCTAACCGAGGGATGCTCCTTTAGGAAGAAGGGAGACTGA 591 0.423 MVIVTINSGVSDRDGISDDCGDNDKGDIVDGGDNDSDDDIDGGSAANSNDIGDNDDCGSNNGDTNYGSSGDNSNNVDSDSDIGNDGGDASDTSYDSDNDGFLAPPISSLNMVLQNDIDLLNPPVELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00419 196 MobiDBLite consensus disorder prediction 41 97 - -
Gma16g00419 196 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 110 195 - -
Gma16g00419 196 PANTHER 40S RIBOSOMAL PROTEIN S27 110 195 IPR000592 GO:0003735|GO:0005840|GO:0006412
Gma16g00419 196 SUPERFAMILY Zn-binding ribosomal proteins 140 194 IPR011332 GO:0006412
Gma16g00419 196 MobiDBLite consensus disorder prediction 1 101 - -
Gma16g00419 196 MobiDBLite consensus disorder prediction 15 30 - -
Gma16g00419 196 Hamap 30S ribosomal protein S27e [rps27e]. 134 194 IPR000592 GO:0003735|GO:0005840|GO:0006412
Gma16g00419 196 ProSitePatterns Ribosomal protein S27e signature. 148 180 IPR000592 GO:0003735|GO:0005840|GO:0006412
Gma16g00419 196 Pfam Ribosomal protein S27 140 194 IPR000592 GO:0003735|GO:0005840|GO:0006412
Gma16g00419 196 Gene3D - 115 195 IPR023407 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00419 Gma-Chr16 4485433 4487306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00419 111 196 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 1.72e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00419 K02978 - minc:123230388 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00419 16 4485433 4487306 Gma16g01358 16 32519434 32520725 PCT
Gma16g00419 16 4485433 4487306 Gma02g00603 02 5999640 6001199 PCT
Gma16g01358 16 32519434 32520725 Gma16g00419 16 4485433 4487306 PCT
Gma02g00603 02 5999640 6001199 Gma16g00419 16 4485433 4487306 PCT