Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00417 ATGAATCCGCGCACGACGTCGTCGTCGAAGGCGAAGAAAAAGCAAACGACAACGACGCAGGAGTCGCCGCACCAAAGGGCATCATCATCATGGGGAGGGAGGTACCTCGGCGTGCGGCGGAGGCCGTGGGGTCGGTACGCGGCGGAGATTCGCGACCCTTCCACGAAGGAGCGGCACTGGCTCGGCACGTTCGACACCGCCGACGAGGCCGCGCTGGCGTACGACAGAGCCGCACGTGCCATGCGGGGCTCACGTGCCCGCACCAACTTCGTCTACGCCGACACCACCCCCGGCTCCTCCGTCACCCCCATCATTTCACCCGACCAACCACAACCCGACCCGGTTCTTTCATTCGACCCGTTTTCCCTCCTCGCCTTCCCCTCCGGTTCTTATTCTGCCAGCGTGGCAGCTTCTCAGTTTAGCCAACAACAACAACAACCAGATAATAATAATAATAATAATATTATTAACAATAGCAATAATAATAAAGATAGCACGATAGAGCTTCCTCCGTTGCCACCGGATATTACTAGCTCCGTGGGTTATGAAGGGTTTTACAATAATGATGGAGGGTATTATTGGGAGGAGGATGATAATTACTTGCATAATCCAATGTTTAGCACAATGCCAGCAGTGTCAGACAATGTGGCTGCAGCAGCAGGGTCGTCTCAAGTTTTTGATTTTGGAAACTCCTCTTTTTTCTTCTGA 708 0.5325 MNPRTTSSSKAKKKQTTTTQESPHQRASSSWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSVTPIISPDQPQPDPVLSFDPFSLLAFPSGSYSASVAASQFSQQQQQPDNNNNNNIINNSNNNKDSTIELPPLPPDITSSVGYEGFYNNDGGYYWEEDDNYLHNPMFSTMPAVSDNVAAAAGSSQVFDFGNSSFFF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00417 235 MobiDBLite consensus disorder prediction 136 167 - -
Gma16g00417 235 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Gma16g00417 235 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Gma16g00417 235 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Gma16g00417 235 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Gma16g00417 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 129 235 - -
Gma16g00417 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 114 - -
Gma16g00417 235 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Gma16g00417 235 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Gma16g00417 235 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Gma16g00417 235 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Gma16g00417 235 MobiDBLite consensus disorder prediction 136 173 - -
Gma16g00417 235 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 129 235 - -
Gma16g00417 235 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 114 - -
Gma16g00417 235 MobiDBLite consensus disorder prediction 1 34 - -
Gma16g00417 235 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00417 Gma-Chr16 4436663 4437782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00417 6 215 AP2-EREBP Transcription Factor Family AT5G13910 48.214 5.72e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma16g00417 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00417 K09286 - gmx:100792421 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00417 16 4436663 4437782 Gma16g01360 16 32572556 32573850 PCT
Gma16g00417 16 4436663 4437782 Gma02g00605 02 6017915 6018739 PCT
Gma16g01360 16 32572556 32573850 Gma16g00417 16 4436663 4437782 PCT
Gma02g00605 02 6017915 6018739 Gma16g00417 16 4436663 4437782 PCT