Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00402 ATGGAGAAGGAAGGAGGAAAAAACATGAACTTTGATAGATTGAGATGGAGTTCATGGGCTTCAGGCTTTGACACCAATACTCATCAAATTTCTTTGCTTGCAGGTGAACCGGCAGTGTTGGGTGCCATTACTTCTACTCAACAGAGGTTGAGACTGTATAATAAGGTTCCTCCAAATGGTTTGGTTCTTTATACTGGCACCATTATCACTGAAGATGGCAAGGAAAAAAAGGTGACAATTGATTTCGAACCTTTCAAGCCTATCAATGCATCACTTTACCTCTGTGACAACAAGTTTCACACAGAAGCTCTAAATGAACTTTTAGAATCGGATGACAAGTTTGGTTTTATTATTATGGATGGAAACGGCACCCTTTTTGGGACATTGACCGGAAACACTCGTGAGGTGCTTCATAAATTTACTGTTGATCTCCCAAAGAAGCATGGCCGAGGAGGGCAGTCAGCATTGCGTTTTGCTCGTCTTCGCATGGAAAAGTGGCACAACTATGTAAGGAAGACTGCAGAACTTGCTACTCAGTTTTTCATCAATCCTGCTACGAGTCAACCTAATGTTTCTGGACTTATACTTGCTGGTTCAGCTGACTTCAAGACTGAGCTGAGCCAGTCAGATATGTTTGATCCTCGTTTGCAAGCAAAAATATTGAATGTGGTTGATGTTTCCTATGGTGGGGAAAATGGCTTTAACCAAGCTATTGAGTTATCGGCGGAGATGTTATCTAATGTAAAGTTCATTCAGGAGAAACGCTTGATCGGAAAATACTTCGAAGAGATCAGCCAGGACACTGGGAAATACGTCTTTGGAGTTGAAGACACGTTGAAGGCATTGGAGATGGGTGCTGTGGAAACACTTATTGTGTGGGAAAATTTGGATATTAATAGATATGTACTGAAAAATAGTTCTACTGGCGAGATTGTCATAAAGCACTTGAACAAGTACCAAGAGGCTAATCAGAGCAACTTCAGAGATTCAGCCACCTCTGCAGAGTTAGAGGTTCAGGAGAAGATGCCCTTGCTTGAGTGGTTTGCAAGCGAGTACAAAAAATTTGGTTGCTCGCTGGAATTCGTGACCAACAAATCTCAAGAAGGATCACAATTTTGCAGAGGGTTTGGTGGTATTGGAGGTACCCTTCGCTACCAGCTCGATATCAGATCGTTTGATGAGTTATCTGATGATGGAGAAGTGTATGAGGATTCCGATTAA 1221 0.4193 MEKEGGKNMNFDRLRWSSWASGFDTNTHQISLLAGEPAVLGAITSTQQRLRLYNKVPPNGLVLYTGTIITEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIIMDGNGTLFGTLTGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKWHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEMLSNVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYVLKNSSTGEIVIKHLNKYQEANQSNFRDSATSAELEVQEKMPLLEWFASEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGTLRYQLDIRSFDELSDDGEVYEDSD 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00402 406 SUPERFAMILY Translational machinery components 111 245 - -
Gma16g00402 406 Gene3D eRF1 domain 2 105 246 IPR042226 -
Gma16g00402 406 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 37 406 IPR004403 GO:0003747|GO:0006415
Gma16g00402 406 Gene3D - 248 406 IPR029064 -
Gma16g00402 406 Pfam eRF1 domain 2 113 247 IPR005141 -
Gma16g00402 406 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 37 109 IPR024049 -
Gma16g00402 406 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 38 386 IPR004403 GO:0003747|GO:0006415
Gma16g00402 406 Gene3D eRF1 domain 1 26 104 IPR024049 -
Gma16g00402 406 SUPERFAMILY L30e-like 247 389 IPR029064 -
Gma16g00402 406 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 37 406 - -
Gma16g00402 406 SMART eRF1_1_2 1 109 IPR005140 -
Gma16g00402 406 Pfam eRF1 domain 3 250 387 IPR005142 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00402 Gma-Chr16 4277756 4280446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00402 38 406 Eukaryotic Initiation Factors Gene Family AT3G26618 91.328 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00402 K03265 - gmx:106796341 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01047 19 38274391 38275311 Gma16g00402 16 4277756 4280446 GST
Gma16g00402 16 4277756 4280446 Gma16g01371 16 32659996 32668410 PCT
Gma16g00402 16 4277756 4280446 Gma02g00616 02 6069125 6073490 PCT
Gma16g01371 16 32659996 32668410 Gma16g00402 16 4277756 4280446 PCT
Gma02g00616 02 6069125 6073490 Gma16g00402 16 4277756 4280446 PCT