Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00390 ATGGGAAGCCCAGAATCCAATTTGCCACCCGGTTTTAGGTTCCACCCAACCGATGAGGAGCTCATTCTTCACTACCTTAGTAAAAAGGTAGCATCCATACCCTTGACCGTTTCCATTATTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGACTTACCAGCTAAGGCCACCTTTGGGGAGAAAGAATGGTATTTCTTCAGTCCTAGAGACCGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACTGATAAGACCATAGTGACATCATTGCAAGGAGGAGCACAAGAGAGCGTTGGTGTGAAGAAGGCTTTGGTGTTTTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGATTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTAACTTCAACAGAGGCATCAATAGGGGTGGGTGAGGTAGATCAAGCAGAGGAGCACTTATTCCAAGAGACCCTTTTGCCAATCTCAAAATCTCCAGCACCTCCACCTCAAAACACATTGATATCTCAGAAATCTGTGTCCTTCTCCAACTTGTTGGATGCCATGGACTACTCTATCCTAAGTAGTTTCTTATCTGAGAATCATACCAACCACCCACCAGGGGTTGGATCAAGTGCTGGATTCAACACTGGGAATTTGGATCAGCAATGCTCTCCAATCAATAACAACAACCCTACCAATAATTACATGTTTCAGAAGAATCCCCAATTGAACCCTTCAGTCTCCAACATGGAAAACATGATGAGGCCAAAGCGCCAAGTTTCAAACATGGATGAGGAAACGTTGTACCCATCAAAGAAATACCTTAGTTCCTCTTGCAACTTCCCTACTAACATCAGCAACCAATACGAGAACCCACAATGGAACTACCTCATGAAGCAGTCTTTGATGAATCAGCGGTTAATGCTTGGTCCTCATCTTCAATTTCAAGGATAA 1062 0.4454 MGSPESNLPPGFRFHPTDEELILHYLSKKVASIPLTVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGAQESVGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKHALTSTEASIGVGEVDQAEEHLFQETLLPISKSPAPPPQNTLISQKSVSFSNLLDAMDYSILSSFLSENHTNHPPGVGSSAGFNTGNLDQQCSPINNNNPTNNYMFQKNPQLNPSVSNMENMMRPKRQVSNMDEETLYPSKKYLSSSCNFPTNISNQYENPQWNYLMKQSLMNQRLMLGPHLQFQG 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00390 353 ProSiteProfiles NAC domain profile. 8 165 IPR003441 GO:0003677|GO:0006355
Gma16g00390 353 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
Gma16g00390 353 Gene3D NAC domain 17 170 IPR036093 GO:0003677|GO:0006355
Gma16g00390 353 SUPERFAMILY NAC domain 5 165 IPR036093 GO:0003677|GO:0006355
Gma16g00390 353 PANTHER OS01G0104200 PROTEIN 6 302 - -
Gma16g00390 353 PANTHER NAC TRANSCRIPTION FACTOR 56 6 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00390 Gma-Chr16 4077997 4080409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00390 4 353 NAC Transcription Factor Family AT3G04070 51.397 2.51e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma16g00390 NAM 7.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00390 - - gmx:100170708 711.835