Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00382 atgaacatggatATGTGCCAAAATGTATCAGTTTCCGGTGAGTGCCAACAAGTGCAGGTTTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGAATTTGTTGAAGACTGTTTTTCAAGCCCACCAAGCTGTGTCTTGGTACCTGTTGGTGTTAAGACTACAAGTACAAAAAGCACAAGCACAAGCATCAACCCTTCTTTGAAGAGACCTCAACAACAAAATGAGCCACCTTTGCAAAACTTTGCTGTGCCAGGGAAGGCAAGGAGCAAAAGGAAGAGGCTTTCAGCACCAAGAACCAACAAAGACCCTCTAAGCATATGGTCACACCATTTGAACCCTCAAAATGAGGCCTTGTGTTCTGACCCTCCTCTACTCAAACAGGCTTATTGGTTGGCAGACAGTGAACTCATCATGCCAAAGCCAAAGGATAAGGAGGAGCAACAAGAAGAGGTTGTGATCATGGCCAAAGAGGATGAAGAAAAAGTGATTATTAATGTGAGCAAGGAAATAAGCTTTGGGGACTCTGAACTTGATGAGGGTAGCAATGGTCAACAACAACCAATGCCAAGAAGGTGCACACATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTGAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTGTTTACTCCATTTCTAGTGAGCAGTAG 846 0.4539 MNMDMCQNVSVSGECQQVQVFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSCVLVPVGVKTTSTKSTSTSINPSLKRPQQQNEPPLQNFAVPGKARSKRKRLSAPRTNKDPLSIWSHHLNPQNEALCSDPPLLKQAYWLADSELIMPKPKDKEEQQEEVVIMAKEDEEKVIINVSKEISFGDSELDEGSNGQQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSVYSISSEQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00382 281 PANTHER GATA TRANSCRIPTION FACTOR 3 281 - -
Gma16g00382 281 CDD ZnF_GATA 208 255 IPR000679 GO:0006355|GO:0043565
Gma16g00382 281 Pfam GATA zinc finger 209 243 IPR000679 GO:0006355|GO:0043565
Gma16g00382 281 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 281 - -
Gma16g00382 281 SMART GATA_3 203 257 IPR000679 GO:0006355|GO:0043565
Gma16g00382 281 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 267 - -
Gma16g00382 281 ProSitePatterns GATA-type zinc finger domain. 209 234 IPR000679 GO:0006355|GO:0043565
Gma16g00382 281 MobiDBLite consensus disorder prediction 72 96 - -
Gma16g00382 281 ProSiteProfiles GATA-type zinc finger domain profile. 203 239 IPR000679 GO:0006355|GO:0043565
Gma16g00382 281 MobiDBLite consensus disorder prediction 72 123 - -
Gma16g00382 281 Gene3D - 199 271 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00382 Gma-Chr16 3983280 3984753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00382 42 271 C2C2-Gata Transcription Factor Family AT4G32890 40.773 2.73e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma16g00382 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00382 - - gmx:100812088 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01071 19 38793033 38794483 Gma16g00382 16 3983280 3984753 GST
Gma16g00382 16 3983280 3984753 Gma16g01393 16 32945406 32947273 PCT
Gma16g00382 16 3983280 3984753 Gma02g00646 02 6315396 6317093 PCT
Gma16g01393 16 32945406 32947273 Gma16g00382 16 3983280 3984753 PCT
Gma02g00646 02 6315396 6317093 Gma16g00382 16 3983280 3984753 PCT