Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00364 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCAACAGAAATCAGGTATTGCAATCACCAAAGGAGGAAAGTTGAAAGGGAGAAGCAGAAGCAACAACACCaacaaatttgttggagtgagacaaaggccttcagggagatgggttgctgagatcaaagacacaactcagaagataagaatgtggcttggcacatttgagacagctgaggaagcagcaagagcctacgatgaagctgcgtgccttcttcgcggatcaaacactcgcaccaacttcATCACTCATGTGTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGAAATCTTCTTAACAACAGAAAAGGTGTAAAAAAACAGGAAGATACTAATGCTAATGCAAATAATGCACCTGCTCCAAAAGTTACCACTACTAGAAGTGTTAGCACTTGTACTAGTACTAGTACTAGTAGTAATTCAAGCAATGGCAATGACAAGAATGATAAGTCTCTTTCTACCGCAAATACTCGAAGTTCGAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGAGTTTGAGTCAGGTCATCAATCCAATGCTTCATGGGGCTTTGGAACTGTCTTTGATCGTTTTCCTATTGCTCAAATATTGGATATACCAAAGATTGATGATGGCCTCCTCACTAATGCAGCTGACTTGGAGCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAATGATACTCTCTGGGATCTTCCACCCTTATGCTCAATGTTCTGTTAA 840 0.3119 MEIQFQQPNLQQQKSGIAITKGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGVKKQEDTNANANNAPAPKVTTTRSVSTCTSTSTSSNSSNGNDKNDKSLSTANTRSSNLFDDAYKPDLSNCREEFESGHQSNASWGFGTVFDRFPIAQILDIPKIDDGLLTNAADLELSEFERMKVERQISASLYAINGVQEYMETVQDSNDTLWDLPPLCSMFC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00364 279 MobiDBLite consensus disorder prediction 121 167 - -
Gma16g00364 279 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Gma16g00364 279 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Gma16g00364 279 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Gma16g00364 279 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Gma16g00364 279 MobiDBLite consensus disorder prediction 114 167 - -
Gma16g00364 279 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Gma16g00364 279 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Gma16g00364 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 12 266 - -
Gma16g00364 279 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Gma16g00364 279 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 266 - -
Gma16g00364 279 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00364 Gma-Chr16 3792474 3793313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00364 24 279 AP2-EREBP Transcription Factor Family AT5G19790 43.019 2.34e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma16g00364 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00364 K09286 - gmx:100782886 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01097 19 39117775 39119016 Gma16g00364 16 3792474 3793313 GST
Gma16g00364 16 3792474 3793313 Gma16g01406 16 33077675 33079032 PCT
Gma16g00364 16 3792474 3793313 Gma02g00658 02 6406789 6414093 PCT
Gma16g01406 16 33077675 33079032 Gma16g00364 16 3792474 3793313 PCT
Gma02g00658 02 6406789 6414093 Gma16g00364 16 3792474 3793313 PCT