Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00334 ATGGAAAATGGCAATGTACAATTCGGTGACAGTGACCAAGAGCATTCTAGCGGCTCAGATGAGTTCGAGTGGTCGGTGATGGAGATGGTGGAAGGGTCGAACAAGTTCGAAAAAGAGGGTTACTCTCTGATGAAGGGAATGGGCATTAGAAAATTCATCATGAGCGAGACTTTCACAATGAGAGGTTTTTCAAACGAAGACACCATAAAAGTTCCTGAGTCTGATATCGGGGCACATTTTGGACTGCTGTTAGAGAATGAAGAGTATCTGATGTTACTTTCTCAGTTGGTGAAGAAAGGCTCCATGCACATATGCTTGTTTTGGGTGCTTGGTCAACTGCATATGTTTGAAACTGAATTTTTCAATGGAACGGAGAAGGATGATCCTGGTGACATAGTTGTTAATGACATGGAACCTAAGCCCAGTGGCCGCGAGCAGAAGCGTTCTAGCGGCTCAGGCGAGTTCGAGGTTGGTGACCCAAATGGTGAAAGGATCACACAAGTTCGAGATAGAGGGTTACTCTCTGACAAAGGGAATGGGCGTTGGAAAATTCATTGCAAGCAAGTACTTTCACTGGGGTTTAGGCAGCCTTACAAATGGAGACACCTCGAGGTGTCAAATTTCCTCAAGGATGACAACTTGAAGTTTAACTTCACTGTTGTTGTTCTTGTTTCGTCCATTGATTCCTCTAAGTTAAACACAATACAAGTTCCTGAATCTGATATGGGGGCACATTTTGGATTGTTGTTAGAGAATGAGGAATTCACTGATGTTACTTTCTCCGTTGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCTGCTCGGTCAACTGTGTTTGGAACTGAATTTATCAATAAGATGGAGAAGGATGATCGTGGTGACATAGTTGTTAATATGACATGGAACCTAAGAGACACTCTTATAGAAGATGAAGGGCTCTTTATGCCGTGTACACCATTCTTGCCTTCACTATCTGAATCATTTCCAGTGAAGTTGTTAGAACCTGCAGAAATGTATGAGTTGCCAAGACTTGAGCTAATGTGTGAATCTGTACTTTGCAAAGACATATCAATAGATTCTGTTGCCTATATTCTAGTTCTGGCTGATCGTTATCATGCTGTTGAATCGAATTTCCATCTGTCTAAACTTTTCTGCTCAAAACCTCCGTGGTAA 1179 0.4215 MENGNVQFGDSDQEHSSGSDEFEWSVMEMVEGSNKFEKEGYSLMKGMGIRKFIMSETFTMRGFSNEDTIKVPESDIGAHFGLLLENEEYLMLLSQLVKKGSMHICLFWVLGQLHMFETEFFNGTEKDDPGDIVVNDMEPKPSGREQKRSSGSGEFEVGDPNGERITQVRDRGLLSDKGNGRWKIHCKQVLSLGFRQPYKWRHLEVSNFLKDDNLKFNFTVVVLVSSIDSSKLNTIQVPESDMGAHFGLLLENEEFTDVTFSVGGERFHAHKLVLAARSTVFGTEFINKMEKDDRGDIVVNMTWNLRDTLIEDEGLFMPCTPFLPSLSESFPVKLLEPAEMYELPRLELMCESVLCKDISIDSVAYILVLADRYHAVESNFHLSKLFCSKPPW 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00334 392 SMART BTB_4 256 358 IPR000210 GO:0005515
Gma16g00334 392 MobiDBLite consensus disorder prediction 127 162 - -
Gma16g00334 392 MobiDBLite consensus disorder prediction 127 152 - -
Gma16g00334 392 MobiDBLite consensus disorder prediction 1 20 - -
Gma16g00334 392 ProSiteProfiles BTB domain profile. 256 311 IPR000210 GO:0005515
Gma16g00334 392 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 67 140 IPR045005 GO:0016567
Gma16g00334 392 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4 174 378 - -
Gma16g00334 392 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4 67 140 - -
Gma16g00334 392 Gene3D Potassium Channel Kv1.1; Chain A 223 383 IPR011333 -
Gma16g00334 392 SUPERFAMILY POZ domain 233 358 IPR011333 -
Gma16g00334 392 Pfam BTB/POZ domain 249 356 IPR000210 GO:0005515
Gma16g00334 392 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 174 378 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00334 Gma-Chr16 3508605 3513764 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma16g00334 BTB 1.1e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00334 K10523 - gmx:106796390 273.863