Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00321 ATGGTGTACTGCAGTCACTGTGCCAAAAATGTCGCTGGCGAGCGACTAGATGATGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCCGAGGAGCCTTCATTTGTTAAGAATGCAGCGGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGTGAGTACTCTGAATCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATTTAAGTTTCGGCCTTGGAGTTAATGATGAACATATGGCTGAACAAGCTTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAACAAGTACATGCTGCTTGTCTCTACATTGCATTCCGGCACAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCAAGTCTTTTTATTCATAGATATACCAAGAATTTGTTAAAGCGAGGGAGTAAGGCTGTTTCGGATACTGCACTGGCCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTCTTAAAATTGTCCATGTATGTGAAGCAACATTAACCAAACGATTGGTAGAATTTGAGGATACAGAGTCTTCTAGCTTGACAGTTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAAAATCCAACGATAATGCCAGAAGGTGGATTAAAAGGATGTATTTCAAAAGATCTACTGTGTGAGCACAAGGAGGATAGTGGGGTGACCCATTTTGCACTTGGATTATGTGAAGCATGCTATAAGGATTTTGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCGTTCCAGCGTGCTGAGAGGGAAAGACTTAAAAAAACACTTCCAGAGGAGAGTGTCGATGAAGCATGTGCTTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCACAAAGAAGATTTGCCTGCCTATGTGCCAGAAAGGGCTAATGTTGAGCATGAGGCCACTAAAGATGGTAAATATGATGATTCACATAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATGAAGAAGTTGATTTGTACATTCATGATGAGGAGGGGAAGCATATCAAGAAGATACTGTGGGAAACAGCAAATAGGGAGTATCTTGAGgagcaggcagccaaggaagcagctgcagcagctaacaagaaagcttttgaggcaaaatttgaaaactgttcggaggatatactagcggcaagagagcttgctgcatcttctattgaagctgtggcaaaatccagaaaggaaatgagacagaaacgagcctatgaggcaaaaaatacaaggccagctcaatctgctgcagaggcctttggccaaatgtctaataaaaaaaggAATTTGCAGGGTCTCAAATCTAAAGTCAATTTTGAACTCCTGAATGAATTGTTTGATGAAATGGATACGCAGGAAAATACCGATGGTCTCAAGATACAGAAGAAAGTACGATTTGATTCGCCCCTAGATAAACATGACAATTTACCGTCCAAGATTGAGAACAAAAATGAAGATGAGATGGGATCAGTGGATGAATTCGAAGATGAAGTGGAAACGAAGAGATTGTCAGAGAGACTCAGAAATCTTTGGAAGCTAAGTTGCAATCTGATAAGCTAG 1833 0.3513 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQSKLSGNYVRTVQSEYSESRQRTLDRAYDEIKYLSFGLGVNDEHMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFRHNNKPYLLIDFSNYLRTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVEFEDTESSSLTVEELNTMAKEHEKNPTIMPEGGLKGCISKDLLCEHKEDSGVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERLKKTLPEESVDEACALANASNDQFKSHKEDLPAYVPERANVEHEATKDGKYDDSHREDESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAANKKAFEAKFENCSEDILAARELAASSIEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDEMDTQENTDGLKIQKKVRFDSPLDKHDNLPSKIENKNEDEMGSVDEFEDEVETKRLSERLRNLWKLSCNLIS 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00321 610 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 541 IPR029529 GO:0000126|GO:0000995|GO:0006383
Gma16g00321 610 Gene3D - 173 264 - -
Gma16g00321 610 SUPERFAMILY Zinc beta-ribbon 2 43 - -
Gma16g00321 610 Pfam Brf1-like TBP-binding domain 409 538 IPR011665 -
Gma16g00321 610 Gene3D - 63 164 - -
Gma16g00321 610 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Gma16g00321 610 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Gma16g00321 610 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Gma16g00321 610 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Gma16g00321 610 Pfam Transcription factor TFIIB repeat 68 156 IPR013150 GO:0017025
Gma16g00321 610 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 541 IPR000812 GO:0006352|GO:0070897
Gma16g00321 610 MobiDBLite consensus disorder prediction 562 584 - -
Gma16g00321 610 CDD CYCLIN 173 248 IPR013763 -
Gma16g00321 610 SMART cyclin_7 76 158 IPR013763 -
Gma16g00321 610 SMART cyclin_7 176 259 IPR013763 -
Gma16g00321 610 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Gma16g00321 610 MobiDBLite consensus disorder prediction 383 406 - -
Gma16g00321 610 CDD CYCLIN 89 143 IPR013763 -
Gma16g00321 610 MobiDBLite consensus disorder prediction 383 409 - -
Gma16g00321 610 MobiDBLite consensus disorder prediction 562 578 - -
Gma16g00321 610 Gene3D Single helix bin 380 451 - -
Gma16g00321 610 SUPERFAMILY Cyclin-like 172 266 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00321 Gma-Chr16 3375640 3386600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00321 1 518 Inorganic Solute Cotransporters AT2G01280 42.777 7.18e-112 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00321 K15196 - gmx:100817609 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01137 19 39785260 39798566 Gma16g00321 16 3375640 3386600 GST