Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00316 ATGTTGGGTGATGGGAAGACTGTGGATTTGTATAAGCTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGACGCCGTTTGCAATGGCAAGTTGTGGGATACCGTTGGGGAGGAGTCTGGGTTGGGTGTGAGTATTGGTTCTTCCGTGAAGTTGGTGTATAGTAAGTATTTGAGTGCTTTGGATGCGTGGTTGAAGAAGGTTGCCGAGAGTAAGGTGTCCCCTGAGTGTTGTGTGGTGGACGATAGGGACATGTTTGGGAGGCGGTTGATGGAGTTGCAGGCTGAGGTCGAAGGGTTGTTGTCCAGTTGCGCTGAGGATGATGCGGCTCGAGAGGAGGAGGTAAAGGGTGGAGGTGATGATGATGATGATAATGTGGATGGGAGGAAGTTGTGTGGTGATGGAAATGGAGGGTGTCCTGATTCGGAGGTGCTGGACTGTGAGAAGAATGAGTCGGTTCTTGGAAATGTGGGTGGGGGAAACAAGGGTGGTGGAGGTGAAGGAGATGGAAATGGAGGGTGTCGTGATTCGGAGATGCCAGACCGTGAGGTGAATGAGTCGGTGAATGGAAACTTGGGTGGGGGGAATGATGCAATGGAAGCGGGGGAAGAGTTTGATGGAGGGAAAATGTCTAAAGAGCAGGTGGTGGATGTGTTGGATGGGGCGAACTACAGTGTGGCTGGATTGTTGAGTGGAGGCGAGAAGTGTGGCGACAATGATGGTAGGGGCTTGGTGATGGATCCACCTGGTGGGGATAGTGATGATCGAAAGAGGAAGAGAGACATGTTGGATTTGTCTGATGGGGATAGTGATAGTTCTGATTGTAAGAGGATGCGAGAGTCTGCGTTGGATATGCTGAGCTGGGTTACAGGTGCTGCAAAGAATCCCTGTGATCCTGAAGTTGGTTCAATACCTGAAAAGGCAAAGTGGAAGTCTCAAAGTAATCAGGAGGTGTGGAAGCAAGTGCTGTTGTTTCGAGAGGCAGCGTTTCTCAAAAGAGGTTCTGATACAAGCAGTGAACAACGTAGCTGGCAGAGTCAGAAGATGCACCCTTTCTTGTATGAAGATCATCTTGGGATAAACTACAATCTTAGGGAGAGGTTGAAATGTGACAAGAAGATTTTATTTGGCCAATCTACACCGTCTGCACGAAGTTCTTCTGATTCATCTGTAGGAATTGAGAACAGAACAACGAGTCCTAATACTGAAGATCCCTATGATGCAAATTCAGGTCTTGACAGATGTGCCACAGTACGCATTCCTTTGGGGGGAAATCGTCAAGCTGAAATACCAGAATGGACCGGTGATATTTCTGAAGGTTATTTGAAGTTTTCAGGGACCTCAATATGGCCAGTGGCAACAGTAAATACCAGACTTCGTATTGAAAAGGACCCCATAGGGAAGGGAAGACAAGATTCATGCAGCTGCTCTGCACCAGGTTCTGTTGAGTGTGTAAGATTCCACATTACCGAGAAAAGGGCTAAAGTTCATCTGGAATTGGGTGCAGCATTTTACGACTGGAATTTTGATCAGGTAGGTGAAGACGTTAAGCTATTGTGGACAGAAGAAGAAGAGAAAAAATTCGAGGATGCGATACGATCAAACCCTCCATCACCTGAGACATATTTCTGGGACCATATCTTTAGGGCATTTCCTACAAAGAGCAGGGCAGATTTAGTTAGTTACTACTTCAATGTCTTTATTTTGGAGCGCAGAGGATACCAAAATAGGCATACTCCCGATGACATTAACAGTGATGACGATGACGATGAAGCTGGACCACTGAGGAATGTTTTCGGACATCAGACACCAAATTCTGGATATCAGGCACCGAATCCGCGCGGTTCCATCTTATTAACCCCCAAAAAGTCACAAACAAAGAAAAAGTAA 1887 0.4685 MLGDGKTVDLYKLFLVVRGKGGYDAVCNGKLWDTVGEESGLGVSIGSSVKLVYSKYLSALDAWLKKVAESKVSPECCVVDDRDMFGRRLMELQAEVEGLLSSCAEDDAAREEEVKGGGDDDDDNVDGRKLCGDGNGGCPDSEVLDCEKNESVLGNVGGGNKGGGGEGDGNGGCRDSEMPDREVNESVNGNLGGGNDAMEAGEEFDGGKMSKEQVVDVLDGANYSVAGLLSGGEKCGDNDGRGLVMDPPGGDSDDRKRKRDMLDLSDGDSDSSDCKRMRESALDMLSWVTGAAKNPCDPEVGSIPEKAKWKSQSNQEVWKQVLLFREAAFLKRGSDTSSEQRSWQSQKMHPFLYEDHLGINYNLRERLKCDKKILFGQSTPSARSSSDSSVGIENRTTSPNTEDPYDANSGLDRCATVRIPLGGNRQAEIPEWTGDISEGYLKFSGTSIWPVATVNTRLRIEKDPIGKGRQDSCSCSAPGSVECVRFHITEKRAKVHLELGAAFYDWNFDQVGEDVKLLWTEEEEKKFEDAIRSNPPSPETYFWDHIFRAFPTKSRADLVSYYFNVFILERRGYQNRHTPDDINSDDDDDEAGPLRNVFGHQTPNSGYQAPNPRGSILLTPKKSQTKKK 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00316 628 MobiDBLite consensus disorder prediction 378 409 - -
Gma16g00316 628 MobiDBLite consensus disorder prediction 598 621 - -
Gma16g00316 628 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Gma16g00316 628 Gene3D - 1 74 IPR036431 GO:0003677
Gma16g00316 628 SUPERFAMILY ARID-like 4 69 IPR036431 GO:0003677
Gma16g00316 628 CDD SANT 519 566 IPR001005 -
Gma16g00316 628 MobiDBLite consensus disorder prediction 107 128 - -
Gma16g00316 628 Gene3D - 519 581 - -
Gma16g00316 628 MobiDBLite consensus disorder prediction 154 207 - -
Gma16g00316 628 MobiDBLite consensus disorder prediction 378 405 - -
Gma16g00316 628 CDD ARID 4 61 - -
Gma16g00316 628 Pfam ARID/BRIGHT DNA binding domain 4 59 IPR001606 GO:0003677
Gma16g00316 628 SUPERFAMILY Homeodomain-like 519 567 IPR009057 -
Gma16g00316 628 MobiDBLite consensus disorder prediction 576 628 - -
Gma16g00316 628 SMART bright_3 1 66 IPR001606 GO:0003677
Gma16g00316 628 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 627 - -
Gma16g00316 628 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 627 - -
Gma16g00316 628 MobiDBLite consensus disorder prediction 248 274 - -
Gma16g00316 628 Pfam Myb-like DNA-binding domain 519 565 IPR001005 -
Gma16g00316 628 SMART sant 515 568 IPR001005 -
Gma16g00316 628 MobiDBLite consensus disorder prediction 236 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00316 Gma-Chr16 3321245 3324301 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma16g00316 ARID 4.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00316 - - gsj:114390964 1209.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00634 07 6510417 6513749 Gma16g00316 16 3321245 3324301 GST
Gma18g02165 18 55371622 55377062 Gma16g00316 16 3321245 3324301 PCT
Gma09g02358 09 48954536 48960048 Gma16g00316 16 3321245 3324301 PCT
Gma16g00316 16 3321245 3324301 Gma18g02165 18 55371622 55377062 PCT
Gma16g00316 16 3321245 3324301 Gma09g02358 09 48954536 48960048 PCT