Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00314 ATGCATAAAGTTTGGTGGCGACTGATCCTTTTTCGATCCCACATAACCAAAGAGAATGACAATATCACTGGTAGGTTTGATTATTTAACAGAAAAGGACTGCTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACACCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCGTGAGTCTTTAACATCTAATGATGGTAGGGCTATGTCCCTCACTACTGGATTGCTGGTAAGCTTGAACCTGGAAACTTCCACACCTGATACATACCAGTCCCCTCCCGCACCTCCACCTTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGTAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGCGATGATCTTGAAGAATCTGACTGTAAAGCTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGAATTGTCAAAATCTAAAGAATTTCATGCATTAGTAACAGAAGAAGAGGACGGCTGTCCAATTTGTCTTGATGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGCAATCAGGAGATGATATTTGACCAGACATTGAACTAG 684 0.4152 MHKVWWRLILFRSHITKENDNITGRFDYLTEKDCWKMGGCCCSARKPHLHGTPVYYYCPPTLEERESLTSNDGRAMSLTTGLLVSLNLETSTPDTYQSPPAPPPYDMVLGGPASTDSESGRVTVSGSSFETLITCDDLEESDCKAKANSAPISPSKAELSKSKEFHALVTEEEDGCPICLDEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICNQEMIFDQTLN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00314 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Gma16g00314 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 227 - -
Gma16g00314 227 SUPERFAMILY RING/U-box 167 223 - -
Gma16g00314 227 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Gma16g00314 227 Pfam Ring finger domain 176 217 IPR001841 -
Gma16g00314 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 37 227 - -
Gma16g00314 227 SMART ring_2 176 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00314 Gma-Chr16 3297209 3300214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00314 37 227 C3H Transcription Factor Family AT4G00335 60.209 2.19e-79 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00314 - - gmx:100804435 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00632 07 6486928 6489832 Gma16g00314 16 3297209 3300214 GST
Gma18g02169 18 55413824 55416082 Gma16g00314 16 3297209 3300214 PCT
Gma09g02353 09 48915225 48917278 Gma16g00314 16 3297209 3300214 PCT
Gma16g00314 16 3297209 3300214 Gma18g02169 18 55413824 55416082 PCT
Gma16g00314 16 3297209 3300214 Gma09g02353 09 48915225 48917278 PCT