Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00312 ATGACATCTCCTTATACTCCTCGCCGGCGATCCAGCTCCGACCACCGCACCAGGCCAGAAAGAGCGCCCCCCTCCCCCGGTTACGCCTCCTCCGAGTTCAGCACCTCCTCCACCGTCTCCGCCCACCGGAACTCCGTCTCCGCCGTCGCCAAGTCCTTCGCCGGAATCTTTGCCGGGTGCTTCTCCCCGCCGGATTCCGACAACTCCAAGAGCCTCGGGGATTCCGAGGAGTTCAAGTCTTCTTCCACTGTATCAAATGCTTCCAGAGCTGGTAGTCAGAGAGGGCATGGCTCGAAACGAGGTACCAGCATCAGTTCATACAACATATTACCAGCGAAAGAACCAGGCAGTGTTGAGTTCACCATGGAGGAAATCTTCCGAGTCACAAGAAACTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTGCTGTCTATAGGGCCAAACTCCTGGATGGGACTGTTGTTGCAGTAAAGCGTGCTAAGAAGAGTGTGTATGAGAAACATTTGGGGGTGGAGTTCCAGAGCGAGATCCAAACACTATCACGTGTGGAACATTTGAACTTGGTCAAGTTCTTTGGATATTTGGAGCAAGAGGATGAAAGGATCATTGTTGTGGAGTATGTTCCAAATGGAACCCTTAGAGAGCATTTAGATTGCATTCATGGAAGCGTTCTGGACCTTGCTGCACGTTTAGATATAGCAATTGATGTTTCTCATGCTATTACCTATCTTCATATGTATATAGATCATCCTATCATTCACAGAGACATAAAATCTTCGAACATTCTTCTCACTGAAAATTTTCGAGCTAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCCCCTGACAGTGACTCTGGCATGACACATGTTTCCACCCAAGTAAAAGGAACAGCTGGTTACTTGGACCCTGAATACCTGAAAACTTATCAACTAACTGAAAAGAGTGACGTGTATTCATTTGGAGTTTTGCTTGTTGAACTTGTCACAGGAAGACGCCCCATTGAACCAAAATTTGAACTCAGGGAGCGAATCACGGCAAGATGGGCTATGAAGAGGTTCATTGAGGGAGATGCTATCTCAGTCTTGGACCCAAGACTGGACCAGATTGCTGCAAATACTTTAGCACTAGAAAAGATCCTTGAGCTAGCTTTACAGTGCTTGGCTCCACGTAGACAAAGTAGGCCAACTATGAAGAGATGTGCTGAGATCCTTTGGTCCATCCGCAAGGATATCAGAGAGCAGCTATCCGCTTCAAATTTCCGCTCATTTTCCACTTCTTCCCAAAGAAGCACCTCATTGAAAGAGTGA 1317 0.4746 MTSPYTPRRRSSSDHRTRPERAPPSPGYASSEFSTSSTVSAHRNSVSAVAKSFAGIFAGCFSPPDSDNSKSLGDSEEFKSSSTVSNASRAGSQRGHGSKRGTSISSYNILPAKEPGSVEFTMEEIFRVTRNFSPSFKIGQGGFGAVYRAKLLDGTVVAVKRAKKSVYEKHLGVEFQSEIQTLSRVEHLNLVKFFGYLEQEDERIIVVEYVPNGTLREHLDCIHGSVLDLAARLDIAIDVSHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELRERITARWAMKRFIEGDAISVLDPRLDQIAANTLALEKILELALQCLAPRRQSRPTMKRCAEILWSIRKDIREQLSASNFRSFSTSSQRSTSLKE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00312 438 ProSiteProfiles Protein kinase domain profile. 132 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00312 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Gma16g00312 438 CDD STKc_IRAK 138 407 - -
Gma16g00312 438 PANTHER RECEPTOR-LIKE PROTEIN 55 8 427 - -
Gma16g00312 438 Pfam Protein kinase domain 137 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00312 438 SUPERFAMILY Protein kinase-like (PK-like) 106 410 IPR011009 -
Gma16g00312 438 MobiDBLite consensus disorder prediction 1 41 - -
Gma16g00312 438 ProSitePatterns Protein kinases ATP-binding region signature. 138 164 IPR017441 GO:0005524
Gma16g00312 438 MobiDBLite consensus disorder prediction 66 108 - -
Gma16g00312 438 Gene3D Transferase(Phosphotransferase) domain 1 210 432 - -
Gma16g00312 438 SMART serkin_6 132 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00312 438 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 2 8 427 - -
Gma16g00312 438 Gene3D Phosphorylase Kinase; domain 1 95 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00312 Gma-Chr16 3284161 3288652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00312 116 400 Receptor kinase-like Gene Family AT1G79620 45.329 5.72e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Gma16g00312 Pkinase 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00312 - - gmx:100305435 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00630 07 6473723 6478087 Gma16g00312 16 3284161 3288652 GST