Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00306 ATGGGTTTTCCGGTGGGTTACGCGGAGGTGTTCTTCCCGAACCCGTTCCTGCACACGCTGGCCCTCCTCGGCCTCCTCCGAAACCTCGTATTCTTCCTCCTCCACCTCCTCGGATTCTCCGACTTCCTCGAAACCGAGGTCGCCTGGCCGGACCACCCCCACCCCTCCGACGAGGCTGCGGCGGCGCGGCCCCCATCCGCGTCGGCGCTCCTGATCCGCGACCTCCTTCCCGTCGCCAAGTTCGGAGACTCCGACGTTGGCGCCCAACAAAACGGCTTGTGCGCAGTGTGCCTGTTCGAGTTCTCCGAGGAGGAGGAGGTTCGGTGCCTGCGCAACTGCAAGCACATTTTCCACCGCACATGCGTGGACCGTTGGATCGACCACGATCAGAAAACGTGCCCTCTCTGTAGGACCCCCTTTGTGCCTGATGATATGCTTGATGATTATAATCAACGACTCTGGGCTGCTTCTGGGGTTAACGAGTTTTACGCCGATTACACTTCTTCCTTCTGA 513 0.6004 MGFPVGYAEVFFPNPFLHTLALLGLLRNLVFFLLHLLGFSDFLETEVAWPDHPHPSDEAAAARPPSASALLIRDLLPVAKFGDSDVGAQQNGLCAVCLFEFSEEEEVRCLRNCKHIFHRTCVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGVNEFYADYTSSF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00306 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 142 IPR013083 -
Gma16g00306 170 PANTHER BRH1 RING FINGER PROTEIN 1 166 - -
Gma16g00306 170 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Gma16g00306 170 Pfam Ring finger domain 94 137 IPR001841 -
Gma16g00306 170 SMART ring_2 94 136 IPR001841 -
Gma16g00306 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 166 - -
Gma16g00306 170 SUPERFAMILY RING/U-box 93 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00306 Gma-Chr16 3224620 3225230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00306 1 169 C3H Transcription Factor Family AT1G63840 43.678 1.70e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00306 K16281 - gmx:100500261 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00623 07 6391299 6391961 Gma16g00306 16 3224620 3225230 GST
Gma18g02172 18 55441377 55442224 Gma16g00306 16 3224620 3225230 PCT
Gma09g02350 09 48892392 48893194 Gma16g00306 16 3224620 3225230 PCT
Gma16g00306 16 3224620 3225230 Gma18g02172 18 55441377 55442224 PCT
Gma16g00306 16 3224620 3225230 Gma09g02350 09 48892392 48893194 PCT