Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00305 ATGGGATCTTCCAATGAAGGATCTTCTTCTTCCACCCTAACCTCCGGAAGGTCATGGTCCAaccatgttttcttgagttttcggggtgatgacacacgcaaaggtttcactggccatctttttgcttccctagagagaagggggatcaaaacattcaaggatgatcatgatcttcagagggggaaattgatatcagtggaactcatgaaagccattgaagggtccatgcttgctcttatcattctctcaccaaactatgcctcctcaacatggtgtttggatgagctcaaaaagattctagagtgcaagaaagaagtttttccaatcttccatggtgtagacccctctgatgtgaggcatcagagaggaagctttgcaaaggctttcagtgaacatgaagagaaattcagagaagacaagaagaagttggaaagatggagacatgccttgagagaagttgcAAGCTACTCTGGCTGGGACTCCAAGGAACAgcatgaggcaacattgattgaaacaattgttggacacatacagaaaaaaataattcccaggttgccatgttgcacagataaccttgttgggattgattcacggatgaaggaagtgtattcactcatgggcataagtttaaatgatgttcgcttcataggactatggggcatgggaggcataggtaagacaaccattgctagatttgtctacgaagcaatcaaaggggatttcaatgttagttgctttcttgaaaacattagagaggtgtctaagacaaatggcttagttcacattcaaaaggaacttctttttcatcttaatgtaagaagcagtgatttttataatcttcatgatgggaaaaatataatagcaaattctttaagcaacaaaaagattcttcttgttcttgatgatgtaagtgagttaagccaactggagaatttggctggaaagcaagaatggtttggttcagggagtagagtaataatcacaactagagataagcacctgctaaagacgcatggagtgcatctgacttgtaaggctaaaggcttagcccaaaatgaagccctgaagctcttttgtttgaaagcatttaagcaagatcaacctaaagaagagtatctgaatttgtgcaaagaagtggttgaatatgcaagaggtcttccattggcacttgaggtattgggttcccatctttatggaagaaccgttgaggtttggcatagtgctttagaacaaataagaagttttccgcactccaaaatccaagacacactgaaaattagttatgatagtttacaacctccgtatcagaaaatgtttttagatattgcctgtttcttcaaagggatggacatagatgaagtgaaaaatatcttaaaaaactgcggttatcatcccgaaattggaattgacattttgatcgaaagatgtttggtaactctggataggatgaagaagttggggatgcatgatttgctacaagaaatgggaaggaatattgtatttcaagaatctccaaatgatccaggcaaacgtagtagattgtgGTCTCAAAAAGACATTGATTATGTGTTGACAAAAAACAAGGGAACTGATGAAATTCAAGGCATAGTTCTGAACTTAGTTCAACCGTGTGATTATGAAGGACGCTGGAGCACTGAAGCCTTCTCCAAGACAAGTCAACTCAAGTTACTCATGTTATGTGATATGCAGCTTCCCCGTGGCCTCAACTGCCTTCCTAGTTCACTGAAAGTTCTTCACTGGAGAGGATGTCCTTTGAAAACCCTGCCACTTAATAATAAACTAGATGAAGTTGTTGACCTCAAATTGCCTCATAGCCGAATAGAACAACTTTGGCGTGGGACAAAGCTTCTGGAAAAGCTAAAGTCCATCAACTTGagcttttccaagaacctaaagcagtccccggactttggtggggctccaaatcttgaatcattggttctagaagTTTCTAGATCTCACTGGCAACAATTTTGTTACCCTACCAAGTTGCATTTCGAACCTCACAAAGCTTGA 2037 0.108 MGSSNEGSSSSTLTSGRSWSNHVFLSFRGDDTRKGFTGHLFASLERRGIKTFKDDHDLQRGKLISVELMKAIEGSMLALIILSPNYASSTWCLDELKKILECKKEVFPIFHGVDPSDVRHQRGSFAKAFSEHEEKFREDKKKLERWRHALREVASYSGWDSKEQHEATLIETIVGHIQKKIIPRLPCCTDNLVGIDSRMKEVYSLMGISLNDVRFIGLWGMGGIGKTTIARFVYEAIKGDFNVSCFLENIREVSKTNGLVHIQKELLFHLNVRSSDFYNLHDGKNIIANSLSNKKILLVLDDVSELSQLENLAGKQEWFGSGSRVIITTRDKHLLKTHGVHLTCKAKGLAQNEALKLFCLKAFKQDQPKEEYLNLCKEVVEYARGLPLALEVLGSHLYGRTVEVWHSALEQIRSFPHSKIQDTLKISYDSLQPPYQKMFLDIACFFKGMDIDEVKNILKNCGYHPEIGIDILIERCLVTLDRMKKLGMHDLLQEMGRNIVFQESPNDPGKRSRLWSQKDIDYVLTKNKGTDEIQGIVLNLVQPCDYEGRWSTEAFSKTSQLKLLMLCDMQLPRGLNCLPSSLKVLHWRGCPLKTLPLNNKLDEVVDLKLPHSRIEQLWRGTKLLEKLKSINLSFSKNLKQSPDFGGAPNLESLVLEVSRSHWQQFCYPTKLHFEPHKA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00305 678 Gene3D - 181 341 IPR027417 -
Gma16g00305 678 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 656 IPR044974 GO:0006952
Gma16g00305 678 PANTHER TMV RESISTANCE PROTEIN N-LIKE 27 656 - -
Gma16g00305 678 ProSiteProfiles TIR domain profile. 19 181 IPR000157 GO:0007165
Gma16g00305 678 Pfam TIR domain 22 193 IPR000157 GO:0007165
Gma16g00305 678 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 159 IPR035897 -
Gma16g00305 678 Gene3D - 15 180 IPR035897 -
Gma16g00305 678 SUPERFAMILY "Winged helix" DNA-binding domain 418 524 IPR036390 -
Gma16g00305 678 Gene3D Ribonuclease Inhibitor 539 672 IPR032675 -
Gma16g00305 678 PRINTS Disease resistance protein signature 383 397 - -
Gma16g00305 678 PRINTS Disease resistance protein signature 215 230 - -
Gma16g00305 678 PRINTS Disease resistance protein signature 290 304 - -
Gma16g00305 678 PRINTS Disease resistance protein signature 622 638 - -
Gma16g00305 678 SMART till_3 20 156 IPR000157 GO:0007165
Gma16g00305 678 SUPERFAMILY L domain-like 502 656 - -
Gma16g00305 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Gma16g00305 678 Pfam NB-ARC domain 212 431 IPR002182 GO:0043531
Gma16g00305 678 Pfam Leucine Rich Repeat 605 622 IPR011713 -
Gma16g00305 678 Gene3D - 348 432 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00305 Gma-Chr16 3205408 3209050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00305 28 656 WRKY Transcription Factor Family AT4G12020 29.908 6.19e-78 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00305 - - gmx:100815486 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00622 07 6366682 6372027 Gma16g00305 16 3205408 3209050 GST