Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00299 ATGGCAGCTGTTAGGTCTTCCTCTGTAAGACGGTTGGGGAGCACAATTAAGGGTTCTTTTAGTATGGAATTAGTTCACCATAGTATGTGTATGAATCTTGCAAGGTTTCCGAGTGATTCGTTTAATGATCCTTATTACAAAAGAGAGTTACAGTTTGCTAAGAATCAGTTTAGTAATTTGGCTTCTGAATCCCTTGGAAGTAGTCATCACTTTGGTACTAGAGCCAATGTATTGGTTAAACCAACGTTCTCTGGTTATTGTTTTTGGAGTTCCCTTCCTTTTGCTTCCATGAGCAACCACGTTTTGAATCGTCGAATGTATTCATCGTCGTCGGTGGGTGACAAAGGAAGTAGAGATGGTGGTACAGAAGTTTCTGCTGGTTCTGGTGCGAGTGATATGAATACTGGTGGTGATTCTGTTGTTGGGGGTGATTGGGCTGAGAGGATTAAAGATGCTTGGAAGAGTGTGGCAGAGGCAGCATCATATGCTGGAGATAAGGTTAAAGAAACTTCTGATGATCTCACTCCATATGCTCAGCAGTTGCTTGATTCACACCCGTATCTTGACAAGGTGGTTATTCCAGTTGGTGGTACTTTAACTGCTACCATAATAGCTTGGTTCTTGCTGCCTAGGATTTTGAGGAAATTTCACAAATATGCAATGCAAGGTCCTGTTTCTCTATTGCCAGCAAGCGTGGCTGGGGAGCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTATGGAGGATCCAGTGCGATATTTAGTTACCTTCATTGCATTCTCACAAATTGGTGTTATGGTGGCTCCAACAACTATAACCTCACAATATCTTGCTCCCGTTTGGAGGGGTGCAGTGATTGTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGTCATTGTCTAGTCAAAGTTTACTTGGGCTTGATAGGGAGAAAGTGTTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGGATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTGACTGTTGGTGGTATAGGAGGTGTGGCTACTGCTTTTGCTACCAAGGACATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCGATAGAGGGTCAAGTTGTGGAAATGGGTCTTACTAGCACGTCATTGCTGAGTTCAGAGAAGTTCCCAGTCATTGTGCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAGTCCCGTGCTGAATATCGCGCCATTATTACTAAAATTCCACTGCAAACTGAGGATTTAAGTAAGATTCCCCAGATATCAGATGATGTAAAAAGCATGCTCAGATCAAATGCAAATGTTTTCTTAGGGAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAACATATGGTACCTCGCCCATCTGAATCCCTGTGTTAG 1527 0.4185 MAAVRSSSVRRLGSTIKGSFSMELVHHSMCMNLARFPSDSFNDPYYKRELQFAKNQFSNLASESLGSSHHFGTRANVLVKPTFSGYCFWSSLPFASMSNHVLNRRMYSSSSVGDKGSRDGGTEVSAGSGASDMNTGGDSVVGGDWAERIKDAWKSVAEAASYAGDKVKETSDDLTPYAQQLLDSHPYLDKVVIPVGGTLTATIIAWFLLPRILRKFHKYAMQGPVSLLPASVAGEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPVWRGAVIVSFVWFLHRWKTNVFARSLSSQSLLGLDREKVFALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFATKDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTSTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLQTEDLSKIPQISDDVKSMLRSNANVFLGKDVPYCFLSRIESSYAELTLGYNLKHMVPRPSESLC 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00299 508 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 278 364 IPR011014 GO:0016020
Gma16g00299 508 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 89 499 - -
Gma16g00299 508 Gene3D - 276 380 - -
Gma16g00299 508 SUPERFAMILY Sm-like ribonucleoproteins 365 430 IPR010920 -
Gma16g00299 508 MobiDBLite consensus disorder prediction 109 137 - -
Gma16g00299 508 Pfam Mechanosensitive ion channel 323 497 IPR006685 GO:0016020|GO:0055085
Gma16g00299 508 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 89 499 - -
Gma16g00299 508 Gene3D - 381 429 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00299 Gma-Chr16 3173798 3178032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00299 145 499 Mechanosensitive Ion Channel Family AT4G00290 66.479 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00299 K22047 - gmx:100814954 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00615 07 6335214 6339016 Gma16g00299 16 3173798 3178032 GST