Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00294 ATGTTCTCAGTATACGACGCCGCTTTCGTCGACACAGAGCTCTCCAAACGCACTTCAATCTTCGGCCTCCGCCTCTGGGTCCTCATCGGCATCCTCGTCGGATCCCTCATCGTCATCACCCTCTTCCTCCTCTCCCTCTGCCTCACCTCCCGCCGCCGccaccaccaccaccaccaccaccaccacAAGCACCGCCGTCACCCCACTCCCCCAATCTCCAAAGAAATCCTCGAGATCNNNNNNNNNNTCCACGTCCCCCCACCCCCCGACACCGGCCACCTCCCCCCTCCTCCTCCACTGCCGCCAAAACCCGACCACCCTCGCTCCGCCGCCATggcggcgctctactctagcggcgagagcagagcagccgcgagcgtgtgcgaaacggcgtcgtcgtcgctcggaagcgggagtgtgggccccgaagtgtcacatctcgggtggggaaggtggtacacgctccgagaactcgaatccgccactaatgggttgtgcgaagagaacgtcatcggcgaaggtggctacggaatcgtgtactgtggcttgttgcccgatggcacaaaagttgctgTTAAGAACCTTTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGAATACAGGATGCTTGTGTATGAATATGTCAACAATGGGAATCTAGAACAGTGGCTTCATGGGGATGCTGGACCTGTAAGCCCAATGACATGGGATATCCGAATGAACATTATATTGGGCACGGCAAAAGGATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGCAACATACTGATTGATCGCCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCTGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGTTACGTTGCACCAGAGTATGCATGCACTGGAATGCTGactgagaagagtgacgtgtatagttttgggatacttattatggaaataattactggaagaagtcctGTTGATTATAGTAAACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAGGGCTCTTAAACGGGCTTTGTTGGTTGCTCTTCGATGTGTTGACCCTGATGCGGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTAGAGCATAAGGACTCAAGATTAGATAAAAGGAAGATAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAGTACTACTAGTAGTAGACATCACCCTCAGCCCACTAGATGGAGATAA 1503 0.3739 MFSVYDAAFVDTELSKRTSIFGLRLWVLIGILVGSLIVITLFLLSLCLTSRRRHHHHHHHHHKHRRHPTPPISKEILEIXXXXHVPPPPDTGHLPPPPPLPPKPDHPRSAAMAALYSSGESRAAASVCETASSSLGSGSVGPEVSHLGWGRWYTLRELESATNGLCEENVIGEGGYGIVYCGLLPDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGEYRMLVYEYVNNGNLEQWLHGDAGPVSPMTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNPKVSDFGLAKLLSADHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSKPQGEVNLIEWLKSMVGNRKSEEVVDPKIAEKPSSRALKRALLVALRCVDPDAAKRPKIGHVIHMLEAEDLLFRDDRRSGGESSRSHRDYQLEHKDSRLDKRKIGGEITDQSEDDSTTSSRHHPQPTRWR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00294 500 MobiDBLite consensus disorder prediction 80 112 - -
Gma16g00294 500 MobiDBLite consensus disorder prediction 88 106 - -
Gma16g00294 500 Gene3D Transferase(Phosphotransferase) domain 1 241 448 - -
Gma16g00294 500 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 3 481 - -
Gma16g00294 500 MobiDBLite consensus disorder prediction 447 500 - -
Gma16g00294 500 Gene3D Phosphorylase Kinase; domain 1 146 240 - -
Gma16g00294 500 SMART serkin_6 165 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00294 500 MobiDBLite consensus disorder prediction 447 491 - -
Gma16g00294 500 ProSiteProfiles Protein kinase domain profile. 165 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00294 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Gma16g00294 500 CDD STKc_IRAK 171 437 - -
Gma16g00294 500 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Gma16g00294 500 PANTHER OS01G0323000 PROTEIN 3 481 - -
Gma16g00294 500 Pfam Protein kinase domain 168 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00294 500 SUPERFAMILY Protein kinase-like (PK-like) 143 437 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00294 Gma-Chr16 3116641 3120886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00294 152 437 Trihelix Transcription Factor Family AT5G38560 47.945 6.95e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gma16g00294 Pkinase 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00294 - - gmx:100777348 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00294 16 3116641 3120886 Gma16g00294 16 3116641 3120886 ECH
Gma07g00609 07 6261765 6265432 Gma16g00294 16 3116641 3120886 GST
Gma19g02367 19 52285555 52288762 Gma16g00294 16 3116641 3120886 PCT
Gma03g02326 03 48510187 48512629 Gma16g00294 16 3116641 3120886 PCT
Gma18g02186 18 55616125 55619870 Gma16g00294 16 3116641 3120886 PCT
Gma09g02342 09 48800727 48804347 Gma16g00294 16 3116641 3120886 PCT
Gma16g00294 16 3116641 3120886 Gma18g02186 18 55616125 55619870 PCT
Gma16g00294 16 3116641 3120886 Gma09g02342 09 48800727 48804347 PCT