Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00293 ATGGTGTCGGTGAACCCAAACCCCGCTCAAGGCTTCTACTTCTTCGATCCCTCCAACATGACCCTTCCCGGCGTCAACAATCTTCCACCGCCGCCGCCGCCGGCTCCGGCTGCTCCTGCCGCCGTCGAGGATCCGAATAAGAAGATCCGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTatttgatcgggactggaaaaagattgaagcatttgttggttcaaaaacagttatccagATACGAAGTCATGCACAAAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCTAAAACTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATCTGCTTTCATTGAACCTGCATACATTTATAGCCCAGATTCTTCATCTGTGCTTGGAACTCCAGTTACTAACATGCCTTTATCATCTTGGAATTATAATACTACACCACAACCAGGCAATGTGCCACAAGTGACCAGAGATGACATGGGATTGACTGGAGCTGGACAAGCTGCTCCTCTTAATTGTTGCTACAGCAGTAGTAATGAGAGCACCCCTCCGACTTGGCCTCGTAGCAAAAGGATTAATCAAGGTGACCAGGGCAAGCCAATTAAAGTAATGCCAGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTCGATCCAAATTCAACTAATCACCTACAGAAACTACAACAGATGGACCCAATAAATGTGGAAACGGTATTGTTGTTGATGACAAATCTCTCCGTCAATTTAATGAGTCCTGAATTTGAGGATCATCAAATCCTTCACCAATAA 909 0.4312 MVSVNPNPAQGFYFFDPSNMTLPGVNNLPPPPPPAPAAPAAVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKTPTVSQVMGPLQSSSAFIEPAYIYSPDSSSVLGTPVTNMPLSSWNYNTTPQPGNVPQVTRDDMGLTGAGQAAPLNCCYSSSNESTPPTWPRSKRINQGDQGKPIKVMPDFAQVYSFIGSVFDPNSTNHLQKLQQMDPINVETVLLLMTNLSVNLMSPEFEDHQILHQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00293 302 MobiDBLite consensus disorder prediction 215 230 - -
Gma16g00293 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Gma16g00293 302 MobiDBLite consensus disorder prediction 24 40 - -
Gma16g00293 302 CDD SANT 61 104 IPR001005 -
Gma16g00293 302 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Gma16g00293 302 MobiDBLite consensus disorder prediction 24 53 - -
Gma16g00293 302 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Gma16g00293 302 ProSiteProfiles SANT domain profile. 57 110 IPR017884 -
Gma16g00293 302 MobiDBLite consensus disorder prediction 108 142 - -
Gma16g00293 302 MobiDBLite consensus disorder prediction 215 236 - -
Gma16g00293 302 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Gma16g00293 302 Gene3D - 62 109 - -
Gma16g00293 302 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
Gma16g00293 302 SMART sant 58 106 IPR001005 -
Gma16g00293 302 PANTHER SWI/SNF COMPLEX-RELATED 2 300 - -
Gma16g00293 302 PANTHER MYB TRANSCRIPTION FACTOR 2 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00293 Gma-Chr16 3103871 3110116 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma16g00293 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00293 - - gmx:778090 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00293 16 3103871 3110116 Gma16g00293 16 3103871 3110116 ECH
Gma18g02192 18 55667678 55673198 Gma16g00293 16 3103871 3110116 ECH
Gma07g00606 07 6225473 6230840 Gma16g00293 16 3103871 3110116 GST
Gma18g02192 18 55667678 55673198 Gma16g00293 16 3103871 3110116 PCT
Gma09g02338 09 48761540 48765433 Gma16g00293 16 3103871 3110116 PCT
Gma16g00293 16 3103871 3110116 Gma18g02192 18 55667678 55673198 PCT
Gma16g00293 16 3103871 3110116 Gma09g02338 09 48761540 48765433 PCT