Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00289 ATGGTGGACTCCGGCAGTGACTTCGCCGGCATCATTTGTTCGATCTGCTACGAACCCCTCAACCCCATTAACGAGGATCTTCAATCGGTCTCCATCTGTGGCCACGTTTTTCACGAGCTTTGTCTACAGCAGTGGTTCGAGTACTCTTCGAAAGGGAAGAAGCACACTTGCCCCATTTGCAAACAGGGTTGCAGGGCCAGTGACGCGTGCAGGCTCTATTTTCAGTCAGTGGGAGATGCGAACAATAGTGTGAAGCCTTCGAAGTGCTTTGAACTTGAGGAAGATGCTGGGGTTCTGCGTAGGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAATTCTCAGGTTGAAGGGCAAACAAAGGAATTAGAAGGACTCAATGAGGAGCTTTGTACTTGCAAGGAGCAGGCAAAGATAGAGACAGCTTTAAAGAATGAGGCTTTAAATCAAAAAGCATCTATACAATTCCAGCTTCAAATGAAATCAGAGGAGCTTGAGAAGTCAACTTTGGAGTGTTTTAGATTAAAAGAAAGGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTATCTGATCTGGACATTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTAAAGACACAATAGATACATTGAAAAGATCTCTGGTCATGCGGAATAGGAGTTACAAAGAATTGATGGCCAAGTGCAATATTCTTGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAGGCTAAAGAGAAGATCACAAAACTGAAGGAGAGGGTACAAGAACTGGAGACATTAGCTGAATCAAAAGAGAACAAATATCTGAGGTCTCTGAAACTTTCAAAAATAACAAAGAGTTCAAAGAATCTCGAAGAAAACATCAAATCTGATTCTGAGGTATTGACAGCGTGCAAATTTTCATCAAAAGAACAAAGCAAACAAATTTCAATACCCAAATCTGGAATAGACCTGACTGCAAACAACAACAGTAAATCTTTTCAATCTTTCAAGATAGAGAACTCCAATGTTACTAAAAATAAGACTGTGAATATTAGTAATGGAAGTAGAAGTACCTTTTCTCTTGATATAAAAAGAGAGTATATCTCAATTGATGACAATGATTCAGAAGGCACTAATGCTTTGCAAGGATGTTCAAAACACAACTACAAAGATCAAGACTGGGATGATATTGCTTTTAGCAAGCCTTCTCTTGTGAAGCTAGAGCCTGTGTCTGGCATAAAGGCTGAAACATCATTGCAAGGAAAATGTACTTTGGCTGAGTCTCCCAGAGTTGATATTGACATTGACATGGCTAACATTTCAGCTAGTGCTATGGATGAAGATGTAACCTTACAAGCCAACATTAAACAACCCATGGTGAACATTAGGAAGGAGTCACCATTAACACTTTCAAATTCAGCTCCAGGGAGCATCTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAACGAGGACAGAACAGTGAACCATCATCTGCAAAACGATCAAGTGATGGGGATTTAATTGCTGTTGGGGCTGATGGTAGAGGGGGAAGAATAAAAGTTCTAAGGACTTCTAGCCAAATTCTCTCGGGTGGTAAGGAAAATTTACTAAGTTCAAAAAGGTCAAAGTTAGGAGTTAAAACAAGTGGTTTGCAATCGCAGGGGTGCCTGCAGATAGAACACTTTTTTGGGAGA 1749 0.4099 MVDSGSDFAGIICSICYEPLNPINEDLQSVSICGHVFHELCLQQWFEYSSKGKKHTCPICKQGCRASDACRLYFQSVGDANNSVKPSKCFELEEDAGVLRREVKRLEVKVSGLNSQVEGQTKELEGLNEELCTCKEQAKIETALKNEALNQKASIQFQLQMKSEELEKSTLECFRLKERNMALAKELAALKLVSDLDIDEEEVLKLATLGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNILGRGEARYSKKLEKAKEKITKLKERVQELETLAESKENKYLRSLKLSKITKSSKNLEENIKSDSEVLTACKFSSKEQSKQISIPKSGIDLTANNNSKSFQSFKIENSNVTKNKTVNISNGSRSTFSLDIKREYISIDDNDSEGTNALQGCSKHNYKDQDWDDIAFSKPSLVKLEPVSGIKAETSLQGKCTLAESPRVDIDIDMANISASAMDEDVTLQANIKQPMVNIRKESPLTLSNSAPGSICFSGGLLGPDGTHRYLGKWCKRGQNSEPSSAKRSSDGDLIAVGADGRGGRIKVLRTSSQILSGGKENLLSSKRSKLGVKTSGLQSQGCLQIEHFFGR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00289 583 Coils Coil 89 130 - -
Gma16g00289 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 63 IPR013083 -
Gma16g00289 583 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 583 - -
Gma16g00289 583 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 583 - -
Gma16g00289 583 CDD RING-H2 13 61 - -
Gma16g00289 583 Pfam Ring finger domain 13 61 IPR001841 -
Gma16g00289 583 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Gma16g00289 583 SUPERFAMILY RING/U-box 11 64 - -
Gma16g00289 583 SMART ring_2 13 60 IPR001841 -
Gma16g00289 583 Coils Coil 247 281 - -
Gma16g00289 583 SMART ringv_2 12 61 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00289 Gma-Chr16 3052730 3056919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00289 463 583 C3H Transcription Factor Family AT4G01270 45.968 1.23e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00289 K11985 - gmx:100812811 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00289 16 3052730 3056919 Gma16g00289 16 3052730 3056919 ECH