LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma16g00288	ATGGAAGCCGATTGGGATCTCCACGCCGTCGTCAGAGGCTGCACCACCACCACTTCCTCCGCCGCCACAACCACCACTAACTCCTCCTCTGTTTCTTCCTCTGGCTTTGGTGCTTGTAACCCACCTTCAACTTCAAGCTGTTTTTTCTCTGTTTACAACCCTGCTGAACAAGGAGGCCATGTTTTGTCTCTTTCAGAGAACCCCTTTGAAGCAAGGAGTTCCAATTCCATTGAAGGGCTTCACGAGCTTTGCAAGCCTTTCTTCCTCAAACCACAGCCTCAGACTCTTCAAACCTCTTCTCCACTCTCTTCCTTTTCTTATTCTTCCACACCCAAATCACCTCACAAACAGCAAGAACAAAAGCAGTCTCAGCCTCAGTTTCACCATGCCGGTTCTGCCACCACGCCACGATCCAAAAGAAGGAAGAATCAGCTTAAGAAGGTTTGTCAAGTGGCAGCTGAAAATCTCTCATCAGACATATGGGCTTGGAGGAAATATGGCCAGAAACCCATCAAAGGCTCACCATATCCAAGGGGATACTACAGATGTAGCAGCTCAAAAGGGTGTTTAGCTAGGAAACAAGTGGAGAGGAACAGATCCGACCCAGCAATGTTCATAGTCACATACACTGGTGAACACAACCACCCTGCTCCTACTCATAAAAACTCTCTTGCCGGCTCCACGCGCCACAAACCTCAAACTGCCACTGCCGAAGACGCCGCCACCATAAAACCGGCTTCTCCTTCCACCTCAGGGATGGAAGAAGAGGTGGCACAGCACAGTGCAAAGTCAGAGAGCACAGAAGAAGAAGACATGGAAGATCTCATGAAAAATGATGAGGAATTACCAAACGAATTTGGCTTAACAGAAACGGTGGTATCAGATGATTTCTTTGAAGGATTAGAGGAACTGACAGGGTCTGCCACTGACCCGTTTACAGCCATTAGTAGCAACATTGATCGGTGGCCACTGGCCAATAATTCTGCCACTGCCGCTGGTGGTAGCTGA	1008	0.4871	MEADWDLHAVVRGCTTTTSSAATTTTNSSSVSSSGFGACNPPSTSSCFFSVYNPAEQGGHVLSLSENPFEARSSNSIEGLHELCKPFFLKPQPQTLQTSSPLSSFSYSSTPKSPHKQQEQKQSQPQFHHAGSATTPRSKRRKNQLKKVCQVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPAMFIVTYTGEHNHPAPTHKNSLAGSTRHKPQTATAEDAATIKPASPSTSGMEEEVAQHSAKSESTEEEDMEDLMKNDEELPNEFGLTETVVSDDFFEGLEELTGSATDPFTAISSNIDRWPLANNSATAAGGS	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma16g00288	335	ProSiteProfiles	WRKY domain profile.	152	218	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma16g00288	335	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	1	334	IPR044810	GO:0003700
	Gma16g00288	335	Gene3D	WRKY domain	141	211	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma16g00288	335	MobiDBLite	consensus disorder prediction	212	275	-	-
	Gma16g00288	335	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	1	334	-	-
	Gma16g00288	335	MobiDBLite	consensus disorder prediction	94	146	-	-
	Gma16g00288	335	SMART	WRKY_cls	157	217	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma16g00288	335	MobiDBLite	consensus disorder prediction	94	133	-	-
	Gma16g00288	335	MobiDBLite	consensus disorder prediction	215	235	-	-
	Gma16g00288	335	SUPERFAMILY	WRKY DNA-binding domain	153	218	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma16g00288	335	MobiDBLite	consensus disorder prediction	243	257	-	-
	Gma16g00288	335	Pfam	WRKY DNA -binding domain	159	216	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma16g00288	Gma-Chr16	3041246	3043246	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma16g00288	1	334	WRKY Transcription Factor Family	AT4G01250	46.742	1.88e-84	255

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gma16g00288		WRKY	6.3e-26	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma16g00288	K13425		-	gmx:100815829	605.134

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma16g00288	16	3041246	3043246	Gma10g02188	10	49465910	49467025	ECH
	Gma16g00288	16	3041246	3043246	Gma16g00288	16	3041246	3043246	ECH
	Gma18g02196	18	55762651	55764722	Gma16g00288	16	3041246	3043246	ECH
	Gma01g02223	01	57442275	57443111	Gma16g00288	16	3041246	3043246	ECH
	Gma11g00193	11	1517954	1518722	Gma16g00288	16	3041246	3043246	ECH
	Gma05g02071	05	41968198	41969676	Gma16g00288	16	3041246	3043246	ECH
	Gma08g00174	08	1506030	1507788	Gma16g00288	16	3041246	3043246	ECH
	Gma18g02196	18	55762651	55764722	Gma16g00288	16	3041246	3043246	PCT
	Gma09g02333	09	48691945	48693640	Gma16g00288	16	3041246	3043246	PCT
	Gma16g00288	16	3041246	3043246	Gma18g02196	18	55762651	55764722	PCT
	Gma16g00288	16	3041246	3043246	Gma09g02333	09	48691945	48693640	PCT