Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00284 ATGGAAAGCCAAGATCCACAAAACTCTCCTCCCTTCCTTTTCACTCCCATGTCAATGATGCAAAACCCAAATTTGGAACCTCAAGGCTTGCATGATGACATAGACTGGGTTAGCCTTTTCTCTGGCCAGAGCAACTTCCTTGCGGATGCCAATGCGATGATGGAATGCGCTTCTTCTTCTTCTTCTTCTTCGTCCTCCTCGTGTGCTTTGATGGCTGAAAAGAGTGATAAAGAGACAATGAAAGGGGGTAGATTGAGGAAGACAACACGACCCAGGTTTGCGTTTCAGACGAGAAGTGAAGATGATATTTTGGATGATGGTTATCGTTGGAGGAAGTATGGACAGAAAGCTGTGAAGAACAACATGCATCCCAGAAGCTACTACCGTTGCACGCATCATACATGCAATGTGAAGAAACAGGTGCAAAGGTTATCCAAAGACACAAGCATCGTGGTGACCACTTACGAGGGAATTCACAATCACCCATGCGAAAAGCTCATGGAAACCCTAACGCCCCTTCTGAGGCAAATGCAGTTTCTCTCTAGGTTAGCTTCCAATAATAACGGCGGTCCTTCTTCTCTGCTATAG 588 0.4575 MESQDPQNSPPFLFTPMSMMQNPNLEPQGLHDDIDWVSLFSGQSNFLADANAMMECASSSSSSSSSSCALMAEKSDKETMKGGRLRKTTRPRFAFQTRSEDDILDDGYRWRKYGQKAVKNNMHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLRQMQFLSRLASNNNGGPSSLL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00284 195 ProSiteProfiles WRKY domain profile. 99 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma16g00284 195 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 21 179 - -
Gma16g00284 195 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 179 IPR044810 GO:0003700
Gma16g00284 195 Pfam WRKY DNA -binding domain 105 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma16g00284 195 SUPERFAMILY WRKY DNA-binding domain 96 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma16g00284 195 Gene3D WRKY domain 89 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma16g00284 195 SMART WRKY_cls 104 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00284 Gma-Chr16 2971894 2974712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00284 81 184 WRKY Transcription Factor Family AT1G64000 76.923 1.77e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma16g00284 WRKY 2.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00284 - - gmx:100810669 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00284 16 2971894 2974712 Gma16g00284 16 2971894 2974712 ECH
Gma18g02200 18 55787616 55789532 Gma16g00284 16 2971894 2974712 PCT
Gma09g02329 09 48670799 48672406 Gma16g00284 16 2971894 2974712 PCT
Gma16g00284 16 2971894 2974712 Gma18g02200 18 55787616 55789532 PCT
Gma16g00284 16 2971894 2974712 Gma09g02329 09 48670799 48672406 PCT