Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00278 ATGTCCTCCTTCAACCCTTTCTCCCCTCCACCACCCACCCCTTACCTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGCGTCCTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCACCGCAACAACAACCGCCACACCCCCCGTAACAACACCTCCGATGGCATCGTCCTCCCGCGCGTGATCTTCGTCGCCGAGGACGACGACGATGACGCCACCCGCCAGAACGACGCCGTCACCGGCCTCGACCAGGCCGTAATAAACTCCTACCCCAAGTTTCCTTACGTTAAGGAAGGTGATTACGACAGCACCTGCTCGATCTGTCTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGTCGACACTACTTTCACTTGTGTTGTCTCGACCCGTGGCTCAAGCTTAACGGGTCATGCCCCGTTTGCCGGAACTCTCCCATGCCAACGCCGCTGTCGACGCCGCTGCAGGAGGTCGTGCCGCTCTCACAGTACGCCGATGCCAGGGCGAGGAGCTTCAAAGTAAATCGGCTTGAAGAACGCATGAAATCTTTCAATATTCTGAGTCCTGAAGATAAGGGAATGACAAAACAGAATGTTAATACAAAGTTAAAAAGATGGAGATGTGCTTACTATTTTATCTTCATACCGGGTGCTCTTGCTCTTCTCCTTTCTGTTGCTGCTGTGTCCAAGTTCCTCTCCTTCAAATCATTTCTAGGTACTGAATCTTTATACTCAAATCTGAATCCTGAGGTCCCAAATAGGAATCAAAATGAGGTGCTGATGAAAACCGTTGAAATGGTAATTCATAAAATTGAAGAGGAACTGGACAAACTGAGGGAAACAAAACAGGATCCATCGTCAACCCCATCTGTATTCCAGCAAGGTTCATTTCTTTCCGATATATTAGGACTTCTTGAGTCAGCAGCGACGTCTCATCAACACAGTGAAGGGAGTAATCGGCAAACTGATAATTTCACCATTCATCCTCTGGTGAGAAAAAAGAAGCAATCTGATGAGCCTGCTGATTACTTTCTGCGTGAAGAGATTCGCAAGTATGTCAGGATAAAGCCTAACAGATTAGGAAAACAAAACTTCATGGGGACAAATGCAAGCTTCACCAGCATAGGACACGCATGCTTTGCCATGAAGGAAGAGCTAGAAGAATACATGGACTATGATGTTGGTGAGATCTGCAATGATGACTGGAAGCTAGCTCAAAAGCTTATGGTTCATGGTTGTGATCCTTTACCAAGGAGAAGGTGCTTTTCAAGAGCCCCTAAGCTATACAACCAGCCATTTCCCATCAATGAATCCTTGTGGAAACTTCCTGATGATAGAAATGTCAGATGGAGCCAATACCGGTGCAAGAACTTCTTGTGTCTTGCCAGCAACACCACTCGTAAGGGATTCTTCAAGTGTGCAGACTGCTTCAATCTCACCAACCATGAGATGCCAAGATGGATAAGCCTGGAGGCTGATTCAAACCAGACAGCGGATTTCCTTATATCTGATGTTCTTGGAATTAAGCCAAAAGAGATCAGAATAGGATTGGACTTCAGTGTTGGAACTGGAACTTTTGCTGCTAGGATGAGGGAATTCAATGTGACTATAGTTTCAGCCACTATCAATTTTGGAGCACCCTTTAATGAAATGATAGCTCTTAGAGGACTTGTTCCTCTCTACTTGACTATAAACCAAAGGCTTCCATTTTTTGACAACACCCTGGATTTGATTCACACAACAAGGTTTCTAGATGGGTGGATTGACCTTGTGCTCCTTGAGTTTATATTGTATGATTGGGATAGAGTTCTGAGACCAGGGGGGTTGCTTTGGATAGACAGCTTCTTCTGCTTGAAGGAAGATTTGTATGCTTACTTGCAGGCCTTCAAAATGCTGAGATATAAGAAGCACAAATGGGTAGTTGTTCCAAAGGTTGATAAGGATGATCAAGAAATGTTCTTCTCTGCTGTTTTAGAGAAGCCTCCTAGACAATTCAGGATAAACTCTGTTGATATAATTTCACCCTCGCAGTCGCAGTGA 2085 0.4643 MSSFNPFSPPPPTPYLTNLGFGYSIAIALGVLFLLSTLILSSYLCCRTLRHRNNNRHTPRNNTSDGIVLPRVIFVAEDDDDDATRQNDAVTGLDQAVINSYPKFPYVKEGDYDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYADARARSFKVNRLEERMKSFNILSPEDKGMTKQNVNTKLKRWRCAYYFIFIPGALALLLSVAAVSKFLSFKSFLGTESLYSNLNPEVPNRNQNEVLMKTVEMVIHKIEEELDKLRETKQDPSSTPSVFQQGSFLSDILGLLESAATSHQHSEGSNRQTDNFTIHPLVRKKKQSDEPADYFLREEIRKYVRIKPNRLGKQNFMGTNASFTSIGHACFAMKEELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPKLYNQPFPINESLWKLPDDRNVRWSQYRCKNFLCLASNTTRKGFFKCADCFNLTNHEMPRWISLEADSNQTADFLISDVLGIKPKEIRIGLDFSVGTGTFAARMREFNVTIVSATINFGAPFNEMIALRGLVPLYLTINQRLPFFDNTLDLIHTTRFLDGWIDLVLLEFILYDWDRVLRPGGLLWIDSFFCLKEDLYAYLQAFKMLRYKKHKWVVVPKVDKDDQEMFFSAVLEKPPRQFRINSVDIISPSQSQ 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00278 694 SUPERFAMILY RING/U-box 97 162 - -
Gma16g00278 694 Coils Coil 276 296 - -
Gma16g00278 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 163 IPR013083 -
Gma16g00278 694 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Gma16g00278 694 Pfam Ring finger domain 115 158 IPR001841 -
Gma16g00278 694 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 509 656 IPR029063 -
Gma16g00278 694 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 213 680 - -
Gma16g00278 694 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 522 629 IPR004159 GO:0008168
Gma16g00278 694 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 213 680 - -
Gma16g00278 694 Gene3D Vaccinia Virus protein VP39 507 672 IPR029063 -
Gma16g00278 694 CDD RING-H2_PA-TM-RING 115 158 - -
Gma16g00278 694 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00278 Gma-Chr16 2946016 2949930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00278 9 178 C3H Transcription Factor Family AT5G06490 39.572 1.95e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00278 - - gmx:100809058 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00278 16 2946016 2949930 Gma16g00278 16 2946016 2949930 ECH
Gma07g00583 07 5626211 5626783 Gma16g00278 16 2946016 2949930 GST
Gma18g02206 18 55856167 55856909 Gma16g00278 16 2946016 2949930 PCT
Gma09g02321 09 48613050 48614818 Gma16g00278 16 2946016 2949930 PCT