Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00260 ATGGCCCAAAATAATTCATTGCAACCGACCCATCCAAACCTTATAAAACACTGTCTAATCGCTCTCACTCTTTCCCTAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACCCCGAAATATCGCTTTGTTGTTCGTTTCAGCAACAAAGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACGATATGGTCTTGAAGTAGGGCTTACAAATTATGCTGCAGCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgctactggagaggactattcagtggaacctgctgagagcaggaggccattccgtgctctccttgatgttggtcttattaggactacaactggcaaccgtgtctttggtGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCATAGTGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTGCATCGCAAATATGTTTTTGGTGGACATACAACCTTTTTTTTCCTGCAGATCTTGGCGGAAGATGAACCTGAGAAATATCAGTCACACTTCAGTGAATACATCAAGCGTGGAATAGAAGCTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtacaatctgaagaaactcacttatgaggagaggaaggctaagttgattgctcgtgtggcggctatcaactctgctgctgataatgatgaagatgatgagtga 1023 0.3529 MAQNNSLQPTHPNLIKHCLIALTLSLNPKETQALLPFSPSAMVYVKSQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDIVAQIISASIAGDIVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHTTFFFLQILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKVHAAIRADPSLKKSEKQPPKEHKRYNLKKLTYEERKAKLIARVAAINSAADNDEDDE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00260 340 Pfam Ribosomal L18 C-terminal region 277 330 IPR025607 -
Gma16g00260 340 PRINTS Ribosomal protein L5 signature 61 80 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 PRINTS Ribosomal protein L5 signature 125 145 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 PRINTS Ribosomal protein L5 signature 205 224 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 PRINTS Ribosomal protein L5 signature 84 103 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 PRINTS Ribosomal protein L5 signature 185 204 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 PRINTS Ribosomal protein L5 signature 248 268 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 PANTHER RIBOSOMAL PROTEIN L5-RELATED 42 339 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 PANTHER PROTEIN L5, PUTATIVE-RELATED 42 339 - -
Gma16g00260 340 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 55 216 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 SUPERFAMILY Translational machinery components 52 293 - -
Gma16g00260 340 CDD Ribosomal_L18_L5e 82 211 - -
Gma16g00260 340 Hamap 50S ribosomal protein L18 [rplR]. 55 288 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma16g00260 340 Gene3D - 42 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00260 Gma-Chr16 2775821 2778309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00260 42 333 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 81.849 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00260 K02932 - gmx:100805868 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00558 07 5401649 5404321 Gma16g00260 16 2775821 2778309 GST