Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00252 ATGAGCACTCAGTTACAACAACACAACAAAAGAGAATTCAAGGGAGAAGAAGAAGAAGAGGAGGAGGAAGAAGAAAACCATTTGCTACATTCAGAATGCGAAACAATACCATTGTCCTCACCCCACACATCACCCTCAGAGTGGGAACATGGAAACAGAGAAGAAGAAGAAGAAGAAGAAGAGAAGGACACGGTGTATGCAGCCAAGGACAAGGTGCAGATATTCGACCTGGAGTCCGCCAGTGGCGCCAGTGTGGGGTCAACGGCGGTGCCGCCATTCTCGTGGAGGAAGCTGTGGCTGTTCACCGGACCCGGGTTGTTGATGAGCGTGGCATTTTTAGACCCGGGGAACCTTGAAGGGGACCTTCAGGCTGGAGCCATTGCAGGGTACTCTTTGCTTTGGTTGTTGATGTGGTCAACCTTCATGGGGCTGGTGATACAGCTTCTGTCGGCAAGGCTCGGGGTGGCGACCGGGCGGCACCTGGCGGAGCTGTGCCGGGAGGAGTACTCCAATTGGGCCAGGTTGGTGCTGTGGATCTTGGCTGAGCTTGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCTATTGCTCTCAAGATTCTTAGCCATGGGATTCTCCCCATTTGGGCTGGTGTGATCATCACAGCCATGGATTGTTTCTTCTTTCTATTTCTCGAGAACTATGGAGTGAGGAAATTAGAAGGTGTATTCGCAGTTTTCATTGGAACTATGGGCTTTTCTTTTGCGTGGATGTTCTTCGATACAAATCCCAGTGAAGAAGAACTACTGATGGGCCTTTTGATCCCAAGAGTAAATTCGAAAACGCTTCGTCAGGCTGTGGAAATTGTGGGGTGTGTGATAACCCCACACAATGTATTCCTCCATTCTGCATTAGTACAATCAAGGGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTATAAACTACTACTCAATTGAGTCATCAGTTGCACTTTTAGTAACATTGGTGATCAATCTGTTTGTGATAACCGTTTTCGCTAGGGTGTTCTACGGTACAGAACAGGCGAAAGGCATAGGATTGGTAAATGCAGGGCAGTATCTTCAGGAGAGGTATGGAGGAGGGTTGTTTCCAATTCTCTATATATGGGGTATTGGTTTGTTAGCAGCTGGACAAAGTAGTACCATCACAGGCACATATGCAGGGCAGTTTATAACTGAGGGCTTTCTTAATCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCAATTGTTTTTAATACATCAGAAGGTTCTTTGGATACCATGAATGAATGGCTTAATGTGGTCCAAGCAATACAGATTCCTTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGACCTTCAGAATAGGGCCTATAGTAGAGGTAAGCAAGCTCTCCATCTAA 1473 0.4644 MSTQLQQHNKREFKGEEEEEEEEEENHLLHSECETIPLSSPHTSPSEWEHGNREEEEEEEEKDTVYAAKDKVQIFDLESASGASVGSTAVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTFMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAELALIAADIQEVIGSAIALKILSHGILPIWAGVIITAMDCFFFLFLENYGVRKLEGVFAVFIGTMGFSFAWMFFDTNPSEEELLMGLLIPRVNSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEAINYYSIESSVALLVTLVINLFVITVFARVFYGTEQAKGIGLVNAGQYLQERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLNLNIKKWLRALITRSCAIVPTMICAIVFNTSEGSLDTMNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVEVSKLSI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00252 490 Hamap Divalent metal cation transporter MntH [mntH]. 80 489 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PRINTS Natural resistance-associated macrophage protein signature 177 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PRINTS Natural resistance-associated macrophage protein signature 207 226 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PRINTS Natural resistance-associated macrophage protein signature 232 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PRINTS Natural resistance-associated macrophage protein signature 281 304 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PRINTS Natural resistance-associated macrophage protein signature 388 407 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PRINTS Natural resistance-associated macrophage protein signature 416 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PRINTS Natural resistance-associated macrophage protein signature 450 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 28 486 - -
Gma16g00252 490 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 96 474 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 28 486 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma16g00252 490 MobiDBLite consensus disorder prediction 1 65 - -
Gma16g00252 490 Pfam Natural resistance-associated macrophage protein 119 480 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00252 Gma-Chr16 2725547 2728346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00252 52 484 Inorganic Solute Cotransporters AT1G47240 72.545 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00252 K21398 - gmx:100803732 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00549 07 5334771 5337191 Gma16g00252 16 2725547 2728346 GST