LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma16g00245	ATGGAACAATTTAGACAACTTGGGGAGGCACTAGGGGGTTTGAAATCTGTGATGGTATTCCGGGAGAGCATACAAATCAATCATAGGCAATGTTGTCTGCTGCTTGATGTGTTCACCTTTGCATATGAATGTATTGCAGATGAGATCATACAGAACTTGAAATTTGAAGAGAAGAATGGGAAGTGGAAGATTCTAGAACAGCCCTTGAGAGAGATCCATAAGATTTTCAGAGAAGGAGAAGCTTACATTAGGCATTGCATGGAAACAAAGGACTGGTGGGCTAAATCCATTGTCATGAGCCACAACAATGATTGTGTTGAGTTTCATATACACAACTTGCTTTGTTGCATGCCTGTTGTGATTGAAGCCATTGAGTCTGCAGGGGAAACATCAGGGTGGGATCAAGAGGAGATGCAAAGGAAGAGGCTTATCAATTCCGATAAGTATAGGAAAGAATATAGAGACATGAGGCTTTTCCAGTGGAAATTTGGGAAACAGTACCTCATCACTCAGGACTTCTGCCGCCGATATGATACGGTTTGGAAGGAAGATAGATGGTTCCTTTACAACAAAATCCATGAAAAGAAAGTGGAAGGTATATCAAAGTATGAGAAGAAATTGATAGATTTACTTTTGAGGAATTTGGAGAGATCAGAATCACTTGTAGGGAAGCTCTTGCCAAGTTCAATATTGGTTGGATCTAAGGACTATCAGGTGAGGAGAAGAATGGGGAATGCAAGTCAGTACAAGGAGATTTCATGGTTAGGTGAAAGCTTTGTCATAAGACATTTTTCTGGGGACATTGAGGCTTTGGAACCTGAGATCATAGAACTTTTATCTCTTTCCCATCCTAATATAATGGACAGCCTTTGTGGTTTTACTGATGAGGAGAAGAAGGAATGCTTTTTGGTAATGGAACTAATGAGCAAAACCCTTTCCACCCACATCAAAGAGATTCACGGTCCGCGGAAGCGAATACCGTTCTTGCTTCATGTGGCAATTGATCTCATGCTTCAGATTGCCAGGGGAATGGAGTATTTGCATTCAAAGAAAGTATATCATGGAGAACTAAACCCTTCAAGCATTCTTGTTAGGCCTAGAGGTACATCCCAAGAAGGTTACTTGCATGCCAAGGTAATGGGGTTTGGACTAACTTCTGTTAAGGACTTGACCCAGAAAGGGAACACAAATCAGAATGGAACTCCCCCATTCATCTGGTACTCTCCGGAAGTACTTGAAGAGCAAGATCATTCAGGGGGTGAAGCAAACTCCAAATACACAGAGAAATCTGATGTGTACAGTTTTGGAATGGTTTGCTTTGAGCTTCTAACTGGAAAAGTCCCTTTTGAAGATAGCCATCTCCAAGGGGAGAAAATGAGCAGAAACATAAGGGCAGGAGAGAGGCCACTTTTCCCACCCAATTCACCCAAATATGTCATTAACTTGACAAAGAGATGTTGGCATATTGATCCGCATCAACGTCCGAGCTTCGCTACCATATGTAGAGTTCTTCGTTATATAAAAAGGTTTCTTGCATTGAATCCTGGTTACAGCAATCAGCCAGAACCACCAGTGCCACCAGTAGATTACTGTGATATAGAGTCTGTGCTTCTGAGGAAGTTTCCTTCTTGGGGAGGTTCTGAATCACCATCAGTACCAATCACTCCATTTCAAATGTTTGCATATCAAGCTATAGAGCGAGAAAAAGTAAGCACAGGATGTAAGGATAACTCTGAGTCTGGAAGTGATGCTTCAGCTTGTGGTGATGAACTTGTTACTTCTGGGGATGAACCTTTTCCATCCACAGTTGAAAGGAAGTCTTTGCTTGGACATGATATTTTGAACAGAAGGATTCAATTGACCAGGAAATCTCTTGATTTGAAGCTCACCAAACAACCAGGTACACCAAAAGGGAGATTGGCCAGACCTCCACAAATGTCCCCTCGTACAAGAACTTTGAGAATTACTTCAGATAACCACATGATATCAAGTCCAAGAGCAATAAGAAGAGTATCTCCTGGTCATGTCTCAGACTCTGAGCTTTCTTAG	2049	0.4173	MEQFRQLGEALGGLKSVMVFRESIQINHRQCCLLLDVFTFAYECIADEIIQNLKFEEKNGKWKILEQPLREIHKIFREGEAYIRHCMETKDWWAKSIVMSHNNDCVEFHIHNLLCCMPVVIEAIESAGETSGWDQEEMQRKRLINSDKYRKEYRDMRLFQWKFGKQYLITQDFCRRYDTVWKEDRWFLYNKIHEKKVEGISKYEKKLIDLLLRNLERSESLVGKLLPSSILVGSKDYQVRRRMGNASQYKEISWLGESFVIRHFSGDIEALEPEIIELLSLSHPNIMDSLCGFTDEEKKECFLVMELMSKTLSTHIKEIHGPRKRIPFLLHVAIDLMLQIARGMEYLHSKKVYHGELNPSSILVRPRGTSQEGYLHAKVMGFGLTSVKDLTQKGNTNQNGTPPFIWYSPEVLEEQDHSGGEANSKYTEKSDVYSFGMVCFELLTGKVPFEDSHLQGEKMSRNIRAGERPLFPPNSPKYVINLTKRCWHIDPHQRPSFATICRVLRYIKRFLALNPGYSNQPEPPVPPVDYCDIESVLLRKFPSWGGSESPSVPITPFQMFAYQAIEREKVSTGCKDNSESGSDASACGDELVTSGDEPFPSTVERKSLLGHDILNRRIQLTRKSLDLKLTKQPGTPKGRLARPPQMSPRTRTLRITSDNHMISSPRAIRRVSPGHVSDSELS	682

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma16g00245	682	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-LIKE	1	637	-	-
Gma16g00245	682	Pfam	Protein tyrosine and serine/threonine kinase	269	503	IPR001245	GO:0004672\|GO:0006468
Gma16g00245	682	Gene3D	Transferase(Phosphotransferase) domain 1	254	514	-	-
Gma16g00245	682	SUPERFAMILY	Protein kinase-like (PK-like)	265	530	IPR011009	-
Gma16g00245	682	PANTHER	SERINE-THREONINE PROTEIN KINASE	1	637	-	-
Gma16g00245	682	ProSiteProfiles	Protein kinase domain profile.	237	511	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma16g00245	682	Pfam	Protein of unknown function (DUF1221)	21	234	IPR010632	-
Gma16g00245	682	MobiDBLite	consensus disorder prediction	659	682	-	-
Gma16g00245	682	MobiDBLite	consensus disorder prediction	629	648	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma16g00245	Gma-Chr16	2662574	2665754	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma16g00245	274	504	MAP Kinase Kinase Kinase	AT5G58950	29.487	7.19e-24	104

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_Gdt	Gma16g00245		PK_Tyr_Ser-Thr	1.5e-36	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma16g00245	-		-	gmx:100813704	1388.24

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma16g00245	16	2662574	2665754	Gma16g00245	16	2662574	2665754	ECH
	Gma07g00544	07	5273100	5275716	Gma16g00245	16	2662574	2665754	GST

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