Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00244 ATGGCTACTGCAAATGGTGGAACTGGAGCTGAGAAGCACAAGAGGAAAACTAATGATCCTTTTCTTAAGCAAGGGGGACACCAACTCATGCCAAGATCACCTAGATTGTGCACACCTATTCGGAAGGAATGGCCGGAGAGTTTTCCGAATGACAATGTGATTGGTAATGAGGATAATGGTTTGAATAGATATATTACTTCCTTAGCTGGATCTGGACCTCCTGGTACTAGTTTTTGCTCCTCAATAGATTCTGAACACATTGTTGAAGAGTTGCCTGTTAGGAATTATAAGAACCCGAATTATTTGACTATTGAGTCTAAGTATAATAGATTGAGTAGAGAAATTGTCCCCAAGGTTGAGGAACAGATACCACTCAGATTAAGCAAAGGACTCAAGGGAATTGATTCTGAATTTTGGGGCCTGAAGTCTCTTCCTGGCAAGAGTGTAAATCATGACTCACTGAATGTCTCAGAAGGTAGAAGCAATATGGGCAAGGCTATCATCTCAAACAATGCACATCTAATTAGCAGTATAACTCAGAGTACTTCATCTGCATATAATTATCCTCAATTGATTGTAAAGCAAACAAAGAAGGGAAAGGGGATTATTTGTGAAGATTTAAACCAAAGCTTCAGTACTGGAGGAGCACTTAACAGCCAAGAGGATGAGAAACCTGCTTTTGCAGCTAAGTTTCAATCCGAGACACTGGTGAGATCAAATGTTGATGAGAATAAGCCTTTATTGGAAGGAACTTTCTTGTCTGGTAGCAAAGGACTCAACTTAAGAGAGTGGCTGAAGTCTGAAGGACATAAAGTAAATAAATCAGGAAGGATTCGTATATTTAAGCAGGTATTGGAATTGGTTGATTTTGAACACTCTCAAGGACTCGTCTTGCTAGACTTTCGACCATCTTGTTTCACTTTATTGCCTTCAAGTAAAATTAAGTATATTGGTTCATATGGCCAACAAGAGTTAGATGATGAAGTCATGACATGTAATGTGACTAGGAAAAGGCCTTTGGAACAGAACACCTGTGCTTGCCAGAGTTTGAGTACAAAGCAACAAAAGCTCTGTGAGGAGACAGGATCTTCGAGGCAGCAGCATCACGGTACCAGTATTCATGGCTGCCGGATGACAGTAAATCAAACTGACTCAGACACAAACAGACCTGTGGAATCAAAGAGTAAAGAAAGTCTATGCCAAAATAATTCTATTTGTACTGAAGAAAAGCAGTTTATGTCTGCATTTATTAAGTTAGAAGAGAAGTGGTATTGTAGTCCAGAAGTGCTCAACGATGGAGTATGCATGTTGTCATCAAATATTTATAGTCTTGGAGTTCTCCTTTTTGAGTTGCTGTGCAATATTGAGCCATGGGAGGCGCATTCAACTGCGATGTTGGATTTGTGTCAGAGAATCTTACCACCTAAATTTCTAGCAGAAAATCCGAAGGAAGCTGGCTTTTGTCTTTGGCTTTTGCATCCTGAACCTTCTTCTCGCCCCAATGCCAGAATGATTTTAGAGTCAGAAGTTATGCGTGAATCAGAGGAATCAAATTCTGTAGATGATGTTGGAATATCTGATGACGAGGCTGAAACAGAGCAATTACTAGATTTTCTAATTTTAATCAAAGAAGCAAAGAAAAAACGGGAAGCGAAGCTGGAAGAAGAGCTAAATTTATTGAATGAAGATATTAAGGAGGTAGAAAAAAGTTATTCATTTGTGACAGATTCAGTATTTCCTTTGGTGCAAATGAACAATCCTGAAGTGAGAGGAGACAATTTATATTTTCAAGATCCTTCCGGTTCAGACATTAGTAGATCCATTCGAAGGTCATTTGGTGATGAAGAAAGATTTATGAGTAATCTAAATCAGCTAGAGAATTCTTACTTTTCCATGAGATTCCGAGTGCTGCCAAAAGAGGCTTCATCTGTTTCAAGCAATGAAAAAAATGTGATGGAAAGTAGATGGAGGTTGCCTCAAGTAGAGAATGTTAATAAGGAGTCTAGAAGAATTCAGAGTTCTGTTGGTTGTGTAGGATCCTTCTTTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGCAGATTAAGAAATAGAGATCTGCTTAGTTCTGCCAATGTAATGTGTGCTCTAAGTTTTGACCGTGATGAGGATCACATTGCAGCAGGAGGAGTTTCAAAGAAAATCAAGATTTTCGACCTTAATGCTATTGCAAGCGATTCTGTTGACATCCAGTACCCAGTAATTGAGATGTCAAATAAATCAAAGCTTAGTTGTGTGTGCTGGAACACTTACATTAAAAATCATCTGGCATCTACTGACTATGATGGTGCAGTTCAGATGTGGGATGCAGACACGGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGTCAGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTGTGGAGTATCAGCGAGAGAAATTCTCTGGGAACCATATGGAAACCTGCCAATATATGCTGTGTTCAGTTCTCTGCTTACTCAACAAATCTTCTATTTTTTGGATCAGCTGATTACAAGGTTTATGGTTATGATCTTCGTCACACTAGAATTCCTTGGTGCACATTAGCTGGTCATGGCAAAGCTGTTAGCTATGTAAAATTTATAGATTCTGAAGCAGTTGTCTCTGCTTCCACTGACAACTCTTTAAAGCTTTGGGACCTGAACAAAACCAGCTCTTCTGGTTTGTCATCTGATGCTTGTGCCATGACCTTTAAAGGTCATAGTAATGAAAAGAATTTCGTGGGATTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTGTACTGTTATCACAAATCACTGCCTGTGCCAATTGCTACTCATAAATTTGAGTCAATTGATCACATTTCTGGTCATCTAAATAGTGGTGATAATAATGGACAGTTTGTTTCTAGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTTGCTGCCAACTCAGTTGGAATTGTGAAACTATTGCAGATGGTCTGA 3072 0.3919 MATANGGTGAEKHKRKTNDPFLKQGGHQLMPRSPRLCTPIRKEWPESFPNDNVIGNEDNGLNRYITSLAGSGPPGTSFCSSIDSEHIVEELPVRNYKNPNYLTIESKYNRLSREIVPKVEEQIPLRLSKGLKGIDSEFWGLKSLPGKSVNHDSLNVSEGRSNMGKAIISNNAHLISSITQSTSSAYNYPQLIVKQTKKGKGIICEDLNQSFSTGGALNSQEDEKPAFAAKFQSETLVRSNVDENKPLLEGTFLSGSKGLNLREWLKSEGHKVNKSGRIRIFKQVLELVDFEHSQGLVLLDFRPSCFTLLPSSKIKYIGSYGQQELDDEVMTCNVTRKRPLEQNTCACQSLSTKQQKLCEETGSSRQQHHGTSIHGCRMTVNQTDSDTNRPVESKSKESLCQNNSICTEEKQFMSAFIKLEEKWYCSPEVLNDGVCMLSSNIYSLGVLLFELLCNIEPWEAHSTAMLDLCQRILPPKFLAENPKEAGFCLWLLHPEPSSRPNARMILESEVMRESEESNSVDDVGISDDEAETEQLLDFLILIKEAKKKREAKLEEELNLLNEDIKEVEKSYSFVTDSVFPLVQMNNPEVRGDNLYFQDPSGSDISRSIRRSFGDEERFMSNLNQLENSYFSMRFRVLPKEASSVSSNEKNVMESRWRLPQVENVNKESRRIQSSVGCVGSFFEGLCKFARYSKFEECGRLRNRDLLSSANVMCALSFDRDEDHIAAGGVSKKIKIFDLNAIASDSVDIQYPVIEMSNKSKLSCVCWNTYIKNHLASTDYDGAVQMWDADTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWSISERNSLGTIWKPANICCVQFSAYSTNLLFFGSADYKVYGYDLRHTRIPWCTLAGHGKAVSYVKFIDSEAVVSASTDNSLKLWDLNKTSSSGLSSDACAMTFKGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIATHKFESIDHISGHLNSGDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00244 1023 ProSitePatterns Trp-Asp (WD) repeats signature. 901 915 IPR019775 -
Gma16g00244 1023 ProSiteProfiles Protein kinase domain profile. 152 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00244 1023 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 796 IPR001680 GO:0005515
Gma16g00244 1023 SUPERFAMILY Protein kinase-like (PK-like) 258 512 IPR011009 -
Gma16g00244 1023 Gene3D Transferase(Phosphotransferase) domain 1 249 553 - -
Gma16g00244 1023 PRINTS G protein beta WD-40 repeat signature 774 788 IPR020472 -
Gma16g00244 1023 PRINTS G protein beta WD-40 repeat signature 817 831 IPR020472 -
Gma16g00244 1023 PRINTS G protein beta WD-40 repeat signature 901 915 IPR020472 -
Gma16g00244 1023 SMART serkin_6 169 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00244 1023 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 883 916 - -
Gma16g00244 1023 MobiDBLite consensus disorder prediction 1 33 - -
Gma16g00244 1023 SMART WD40_4 925 964 IPR001680 GO:0005515
Gma16g00244 1023 SMART WD40_4 702 737 IPR001680 GO:0005515
Gma16g00244 1023 SMART WD40_4 833 872 IPR001680 GO:0005515
Gma16g00244 1023 SMART WD40_4 876 914 IPR001680 GO:0005515
Gma16g00244 1023 SMART WD40_4 975 1021 IPR001680 GO:0005515
Gma16g00244 1023 SMART WD40_4 790 830 IPR001680 GO:0005515
Gma16g00244 1023 SMART WD40_4 748 787 IPR001680 GO:0005515
Gma16g00244 1023 SUPERFAMILY WD40 repeat-like 711 1020 IPR036322 GO:0005515
Gma16g00244 1023 Coils Coil 542 570 - -
Gma16g00244 1023 Pfam Protein kinase domain 421 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00244 1023 PANTHER LIGASE COP1, PUTATIVE-RELATED 1 1023 - -
Gma16g00244 1023 Pfam WD domain, G-beta repeat 792 830 IPR001680 GO:0005515
Gma16g00244 1023 Pfam WD domain, G-beta repeat 882 914 IPR001680 GO:0005515
Gma16g00244 1023 ProSiteProfiles Trp-Asp (WD) repeats profile. 883 923 IPR001680 GO:0005515
Gma16g00244 1023 ProSiteProfiles Trp-Asp (WD) repeats profile. 797 839 IPR001680 GO:0005515
Gma16g00244 1023 Coils Coil 1017 1023 - -
Gma16g00244 1023 ProSitePatterns Trp-Asp (WD) repeats signature. 774 788 IPR019775 -
Gma16g00244 1023 PANTHER PROTEIN SPA1-RELATED 2 1 1023 IPR044630 GO:0009640
Gma16g00244 1023 Gene3D - 681 1023 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00244 Gma-Chr16 2648527 2655532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00244 794 978 Miscellaneous Gene Families AT5G08390 26.203 1.83e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Gma16g00244 Pkinase 7.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00244 K16240 - gmx:100802144 2021.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00244 16 2648527 2655532 Gma16g00244 16 2648527 2655532 ECH
Gma07g00543 07 5261642 5268234 Gma16g00244 16 2648527 2655532 GST