Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00238 ATGGAAGAGAATATGAAGTGTGAACTAGTTGGTCTCATTGATGAGTTAATGCAAGGGAAGGAGCTAGCAAAGCAGCTTTGTGACCATCTAGTCTCATTATCATCATCATCTTCTCATGAAACAAATGAAGTCCTAATTGAGAAAATACTTTCCACCTATGAGAAAGCACTTGCCATGCTGAATTGCAAGGCTAATGTAGGAGAAAGTAAGGCCAACATTAATGGCAGCATGATGGATTCCCCTTGTTCTTTCACAAATGGTAGCCCCAAAAGTGAGGTCATGGAGCCTGAGATTAAGAACAAAGATGTCTTTAAGAAAAGAAAGACCATGTCAACGTGCACAGAACAAGTGAAGGTGTGCTTGGGAACGGCGCATGAAGGATCTCTGGATGATGGCTATAGTTGGAGAAAATATGGACAGAAGGATATTCTCGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACATATAGAAATGTACAAGGATGTCTGGCCACAAAGCAGGTGCAAAAGTCAGATGAAGACCCAATGATATGTGAAATAACCTACAAAGGAAGACACACATGCACCCAAGCAAGTCACTTAAACAAAACAGTGATACCCCCATCAAAGACAAAGGTGAACTTGTTGGGAGAAAATAAGCACCAAACCCATCAAATTAAGAATCAACCACGGCAAGAGAAAATAGAACAACAACCACCAGAGACATTTTTCACATTTGGATCATCATCAGGTCTTGAAGTTAAAATAGAGGACATCGACCACAAGGAGGGCATATTCCCATCATTTTGCTTTTCTTCTCCATCAATAGTAGGGTCAGAAAATGGGGACGACAACAACAGCAGCATATTCTCATACACCATGATTGAGAACAACTTAATGGAAAGCTTCTCTCCTGCCTTCATATCTCCAACAACTTCAGATATAGAATCAAACACTTTCTGCCACTGGGGGAGCACTGGACTAGGCCAAAGTGTGCAAAGCTCAGGGTCTGATATCACTGATATAGTTTCAGCACCAACTTCAGTCACCAATTCACCAATAATGGACCTTGATTTCTTTTTCGATAAGATCGATTTCGACACAGATTTCCCTTTGAGCACCATGGAACTTTGCACTTAA 1122 0.41 MEENMKCELVGLIDELMQGKELAKQLCDHLVSLSSSSSHETNEVLIEKILSTYEKALAMLNCKANVGESKANINGSMMDSPCSFTNGSPKSEVMEPEIKNKDVFKKRKTMSTCTEQVKVCLGTAHEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTYRNVQGCLATKQVQKSDEDPMICEITYKGRHTCTQASHLNKTVIPPSKTKVNLLGENKHQTHQIKNQPRQEKIEQQPPETFFTFGSSSGLEVKIEDIDHKEGIFPSFCFSSPSIVGSENGDDNNSSIFSYTMIENNLMESFSPAFISPTTSDIESNTFCHWGSTGLGQSVQSSGSDITDIVSAPTSVTNSPIMDLDFFFDKIDFDTDFPLSTMELCT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00238 373 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 1 370 - -
Gma16g00238 373 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 370 IPR044810 GO:0003700
Gma16g00238 373 SUPERFAMILY WRKY DNA-binding domain 127 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma16g00238 373 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma16g00238 373 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma16g00238 373 Gene3D WRKY domain 113 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma16g00238 373 ProSiteProfiles WRKY domain profile. 124 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00238 Gma-Chr16 2573087 2576271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00238 12 367 WRKY Transcription Factor Family AT2G46400 35.440 1.04e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma16g00238 WRKY 7.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00238 - - gmx:100170747 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00537 07 5178644 5181564 Gma16g00238 16 2573087 2576271 ECH
Gma03g02359 03 48760348 48763203 Gma16g00238 16 2573087 2576271 ECH
Gma19g02399 19 52546413 52549172 Gma16g00238 16 2573087 2576271 ECH
Gma16g00238 16 2573087 2576271 Gma16g00238 16 2573087 2576271 ECH
Gma01g02250 01 57675046 57677042 Gma16g00238 16 2573087 2576271 ECH
Gma05g02103 05 42274814 42276126 Gma16g00238 16 2573087 2576271 ECH
Gma08g00208 08 1800899 1802212 Gma16g00238 16 2573087 2576271 ECH
Gma07g00537 07 5178644 5181564 Gma16g00238 16 2573087 2576271 GST
Gma19g02399 19 52546413 52549172 Gma16g00238 16 2573087 2576271 PCT
Gma03g02359 03 48760348 48763203 Gma16g00238 16 2573087 2576271 PCT
Gma16g00238 16 2573087 2576271 Gma19g02399 19 52546413 52549172 PCT
Gma16g00238 16 2573087 2576271 Gma03g02359 03 48760348 48763203 PCT