Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00231 ATGCCTACAAAGCTGTTCTCCCAACTACGTCTTCTCCATCCCCTCCTCCCCATGAAGCCCCGCACTCTCCCCCTTCTCTCAAGAGCCTTCTTCTTCCCTTCCTCCAAGTTCCTCCGAACCGCACCGTTTAAGGTTCGTGCCTTCTCTTCTAGGGCCCACAGCAGGGAAAAGCTTCCGCTCCGCTCCTCCAAGAGCCTCGTCGACGACGAGGCCGACCTCAGCAACTGGGTCGACGATTTGCGCTCCACCCGGACCGACGAAATGCGGCCCGCCCGGGACAGCGAATTGCGTTCCGGCCGAACCAATGAATTTCGGTccggtcggggcaatggagtccggaccggccggggagacggatttcgatccgaccggggcagcgaagtgcggtccggccggggcaacggagtgcggaccggtaggggagaccggttcgccgattccggccggggaaacggagtgcgaactggtaggggagaccggttcgccgattccggccggggaaacggagtgcgaactggtaggggagaccggttcgccgattccggccggTTCGGCAGCAACAACGACGGAGAGCGCGAATTCCGGCCGCCGAGGAATAATAGTGACAGGGCTTCCGCGTTGGGGAAGAGAAGGGGTGAGGATTTGAGGAAGGGGAGACAGAGTGGCAATGCGAGGAGAAAGTTTCAACCGAGGAGTGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGATAGTGGGTGGAAGAAAGTTGAAGGGTAGTGGCGTTGGAGCATTTCTTAGCGAGGATCAAGATGACGATGAAGATGAAGAGAGTGAAGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAGCCGCTTTGTTTGGTCAACAAAACGGTTTGAACCGGAGGACCACCGTACCAACTCCAAGACCTTCTTCCCCTGGAGGAGGATCTGATTCTTATTTAAGTGAAACCAGATTTGACCAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTGGCAAAGTCACCTCCAAGTGACCGTGATCATAGGCGGCCACCAATTTCTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATCCTACCATTGGTGTACAAGTTGTGATTGGAGGGACAAGACTTGCTTTAGAGCAGAAACGGATGCAGGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTAAGAGATCATACTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGGTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTGCAAGAGGGAACTGAGGAGACACATTCACAGGTCCGCCAGACGCATTTAGTTGCCCCATTGGACAAACATTTCTCTTTACTGTATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGAAGGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACATCGACTCGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACAGTAAAAGATTTGCCTATTGAGAAAGCTCCCGTGTTACCTTCAGTTGATCCTGATACTAAGAAAAAGGTGGAAAAAGCTCTATCCCATGTGGAGATGAAGCATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCCAACAAGAAAGTAGGGCGTGACAAGTACAGGCTAGTGGAGCTTGCAAACGAGTTTAGTAGAAGCATGGGACTTGATAACCCTCCAGCTATACCTAAGCTAGTCCTTGGCAAGATGGGCCTTAGGAATATCCCTGGTTTACGTGCCAAATAG 2370 0.4304 MPTKLFSQLRLLHPLLPMKPRTLPLLSRAFFFPSSKFLRTAPFKVRAFSSRAHSREKLPLRSSKSLVDDEADLSNWVDDLRSTRTDEMRPARDSELRSGRTNEFRSGRGNGVRTGRGDGFRSDRGSEVRSGRGNGVRTGRGDRFADSGRGNGVRTGRGDRFADSGRGNGVRTGRGDRFADSGRFGSNNDGEREFRPPRNNSDRASALGKRRGEDLRKGRQSGNARRKFQPRSDDDDDEEEEEEEIVGGRKLKGSGVGAFLSEDQDDDEDEESEGSEEEEILNKSRAALFGQQNGLNRRTTVPTPRPSSPGGGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPSDRDHRRPPISVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQTHLVAPLDKHFSLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRRSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTVKDLPIEKAPVLPSVDPDTKKKVEKALSHVEMKHKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00231 789 MobiDBLite consensus disorder prediction 261 277 - -
Gma16g00231 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 688 IPR027417 -
Gma16g00231 789 SMART helicmild6 592 673 IPR001650 -
Gma16g00231 789 CDD DEADc_MSS116 327 536 - -
Gma16g00231 789 PANTHER RNA HELICASE 274 787 - -
Gma16g00231 789 PANTHER RNA HELICASE 32 83 - -
Gma16g00231 789 CDD SF2_C_DEAD 549 682 - -
Gma16g00231 789 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 320 348 IPR014014 GO:0003724
Gma16g00231 789 Gene3D - 296 535 IPR027417 -
Gma16g00231 789 Gene3D - 543 767 IPR027417 -
Gma16g00231 789 SMART ultradead3 339 552 IPR014001 -
Gma16g00231 789 MobiDBLite consensus disorder prediction 84 318 - -
Gma16g00231 789 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 351 534 IPR014001 -
Gma16g00231 789 Pfam DEAD/DEAH box helicase 345 522 IPR011545 GO:0003676|GO:0005524
Gma16g00231 789 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 568 716 IPR001650 -
Gma16g00231 789 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 274 787 - -
Gma16g00231 789 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 32 83 - -
Gma16g00231 789 MobiDBLite consensus disorder prediction 186 233 - -
Gma16g00231 789 Pfam Helicase conserved C-terminal domain 568 673 IPR001650 -
Gma16g00231 789 MobiDBLite consensus disorder prediction 84 102 - -
Gma16g00231 789 MobiDBLite consensus disorder prediction 286 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00231 Gma-Chr16 2497991 2503876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00231 320 704 Eukaryotic Initiation Factors Gene Family AT3G19760 29.032 9.44e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00231 - - gmx:100799999 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00231 16 2497991 2503876 Gma16g00231 16 2497991 2503876 ECH
Gma07g00529 07 5094179 5100142 Gma16g00231 16 2497991 2503876 GST