Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00230 ATGATACCAGTCTCACTTGAAAAGTCGGATGAGAATGGAGAACTACGTTCTTATGCTTCCTGGCTAGGAAAACATCCTTCTGCCTTGGGAAATTTTGAGGAGGTGATGACCATTGCTGAAGGGAAACAAATTGTTGTGTTTTTGGACTATGATGGAACACTCTCACCGATTGTAGATGACCCTGACAAGGCTTACATGAGTGATGTTATGCGTGCAGCTGTATGTGAAGTTGCCAATTGTTTTCCCACTGCCATTGTTAGTGGAAGGAGCAAGGATAAGgtataTGAATTTGTGAAGTTAGAGAATGTTTACTATGCTGGAAGTCATGGTATGGACATATCAACACCATCAGGCTCTTCAAAATATGAAGAGCAGGAGCATCAGATAAAGGCTGTTGATGAAAAGGGTAATCCCGTTGTTCACTGTCATCCGGCAATAGAATTTTTGCCAACAATCCAAGAGATAGTTAAGGTTTTGAAAGAAAATACAAGAAGAATAAAGGGCTCTATGATTGAGGATAATACATTCTGTGTCACTGTACACTACCGGTGTGTGAAAAATGAAGAGGAAGTTGGTGTTCTCAAAGAAATGGTAAAGACTATTATGAAAGCTTACCCCGATTTTTACATATCAGGAGGAAGAAAGGTTATGGAGATACGTCCAACTGTAAACTGGGACAAAGGTCGTGCTCTTACATATTTGCTTGACACTCTTGGCTTTGACAACTTCAGCAATGTTCTTCCAATGTACCTTGGGGATGATAGAACAGATGAAGATGCTTTTAAGGTTATAAGAGACATTGGATGTGGTTTTCCCATTGTTGTTTCTTCGATTGCAAAGGAGACTGAGGCTTCATATTCCCTGCGTGACCCTGCTGATGTGCTGACTTTCTTGATTCGTTTAGCAAAACGTAAGAAGAACGAACTTGTTACAGAAAATTGA 942 0.4002 MIPVSLEKSDENGELRSYASWLGKHPSALGNFEEVMTIAEGKQIVVFLDYDGTLSPIVDDPDKAYMSDVMRAAVCEVANCFPTAIVSGRSKDKVYEFVKLENVYYAGSHGMDISTPSGSSKYEEQEHQIKAVDEKGNPVVHCHPAIEFLPTIQEIVKVLKENTRRIKGSMIEDNTFCVTVHYRCVKNEEEVGVLKEMVKTIMKAYPDFYISGGRKVMEIRPTVNWDKGRALTYLLDTLGFDNFSNVLPMYLGDDRTDEDAFKVIRDIGCGFPIVVSSIAKETEASYSLRDPADVLTFLIRLAKRKKNELVTEN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00230 313 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 311 IPR044651 GO:0004805|GO:0005992
Gma16g00230 313 CDD HAD_TPP 45 294 - -
Gma16g00230 313 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 46 267 IPR006379 -
Gma16g00230 313 Pfam Trehalose-phosphatase 47 291 IPR003337 GO:0003824|GO:0005992
Gma16g00230 313 SUPERFAMILY HAD-like 45 303 IPR036412 -
Gma16g00230 313 TIGRFAM T6PP: trehalose-phosphatase 42 302 IPR003337 GO:0003824|GO:0005992
Gma16g00230 313 Gene3D - 145 312 IPR023214 -
Gma16g00230 313 Gene3D - 44 142 IPR023214 -
Gma16g00230 313 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00230 Gma-Chr16 2489515 2492319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00230 46 298 Trehalose Biosynthesis Gene Families AT1G70290 26.592 1.01e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00230 K01087 - gmx:100799466 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00230 16 2489515 2492319 Gma16g00230 16 2489515 2492319 ECH