Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00228 ATGACTGCAAAGGAAAAGAAATTTGTGAGGTTGGATTGGAAGTCACTTTCTTCTTCAAGTATTGAGCACAATGATTCTTCTAATGATGGATTTCTCAAAAGAAAAGTTCGACCAAGCTTAAGTTCTCTCATTGATGGATCAATAACAAATTCGTCTTGTCGGAGCCATGTTCTTGATCCACAGGGGGCAACACTTCAGAAGTGGAACAAAATTTTTGTAATTACAAGTGTGATGGCAGTCTCTGTGGACCCTCTTTTCTTTTACATCCCAATGATTGATGACAAGAAACAATGCCTTGCTTTGGATGGAACACTGAAGATTACTGCCAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCCTCTCGTGTATTTGGAAGGGGTGAGCTAGTTAATGATCCTTGGGCCATAGTAATGAGATACTTAAGCTCTTACTTCATCATTGATATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTACGATCTCAATCCCAAAATGCTCAGTTCCTTATGTGGGAAAGGATTTATTGAAGTACACAATAATAACCCAGTACGTGCCAAGACTTCTGCGGATTTACCCGTTATTCAAAGAAGTAACAAGAACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTTCAATCTTTTTCTGTATATGCTAGCAAGTCATGTTGTTGGAGCATTCTGGTATCTATTTTCGGTTGAATCAAGGTTGCGGTGCTGGCGAAGGCAGTTGAAGACTACTATGATCTTTCATGAATCCTACCTTAGCTGTGGACGTAACAATCCCATTGTTCTATCGCTTCTCAAATATTCTTGCCCTTACACTGATCCAGAAAGCATAGAAAACCTGGCAACTTTCAATTTTGGAATGTTTGTAGAGGCTCTAAAGTCTCGCGTGGTGGAATCAACTACAGATTTTACTCACAAGTTCTTCTATTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAGGTCTCGAGACAAGTAGTTATGTTGGGGAGATAATCTTTGCTATCTTAATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGCAAACATGCAGAAATATCTACAATCTACCAGTGTGAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCAGATTTGCTGAAGGAAAGAATTAGAAGGTATGAGCAATACAAATGGCAAGAAAATAGGGGTGCTGAAGAGGAGACATTGATTCGCAACCTCCCTAAAGATCTCAGAAGGGATATCAAGCGTCATCTTTGCTTAGAACTACTTAGAAAAGTACCAATGTTTGAGGACATGGATAATCAGCTGTTGGATGCACTGTGTGACAGACTGAAGCCAGTTCTTTACACAGAGAAAAGTTACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATAATGCGGGGAAAACTAGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTTGAGATCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCATTGGACCCCAACTCATCCTCAAATCTACCCATTTCAACTAGAACTGTGGAAACTATATCAACAGTTGAAGCCTTTGCTCTCATGTCTGATGACTTGATGTTTGCTGCTTCCCAATTTCGACGGCTTTTAAACAGCAAACAACTTCAGCACACTTTCAGGTTCTATTCCTTGCAATGGAAGACATGGGGTGCATGTTTCATACAAGCAGCTTGGCACAGATACAAAAAAAAGAAGGCTGAGAAGTTGTCACGTGAAGCAGAAGAAAGGATACAAGCTTTGGAAAATGAGGAAGGGTCCTCACCTAGCTTTGCTGCCACAGTATATGCATCAAGGTTTGCTTCAAGTGTATTGTGCCACTTGCGAAGTGGAAAACGCTCCAGAGTGCCACAGCCAAAGAGATTGCTACCCCTGATGCCTCAGAAGCCAGCTGAGCCAGATTTCAGTGCATATATATGTAGACACAGCAACAGCAGTGTGTAA 2100 0.4162 MTAKEKKFVRLDWKSLSSSSIEHNDSSNDGFLKRKVRPSLSSLIDGSITNSSCRSHVLDPQGATLQKWNKIFVITSVMAVSVDPLFFYIPMIDDKKQCLALDGTLKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVNDPWAIVMRYLSSYFIIDILSIIPLPQMVILATISIPKCSVPYVGKDLLKYTIITQYVPRLLRIYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSVESRLRCWRRQLKTTMIFHESYLSCGRNNPIVLSLLKYSCPYTDPESIENLATFNFGMFVEALKSRVVESTTDFTHKFFYCFWWGLRSVSSVGQGLETSSYVGEIIFAILIAVFGLVLFASLIANMQKYLQSTSVRVEEMRVKRRDAELWMSHRMLPDLLKERIRRYEQYKWQENRGAEEETLIRNLPKDLRRDIKRHLCLELLRKVPMFEDMDNQLLDALCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSFEIKAGDFCGEELLTWALDPNSSSNLPISTRTVETISTVEAFALMSDDLMFAASQFRRLLNSKQLQHTFRFYSLQWKTWGACFIQAAWHRYKKKKAEKLSREAEERIQALENEEGSSPSFAATVYASRFASSVLCHLRSGKRSRVPQPKRLLPLMPQKPAEPDFSAYICRHSNSSV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00228 699 Gene3D - 71 387 - -
Gma16g00228 699 SUPERFAMILY cAMP-binding domain-like 392 579 IPR018490 -
Gma16g00228 699 SUPERFAMILY Voltage-gated potassium channels 59 385 - -
Gma16g00228 699 CDD CAP_ED 463 595 IPR000595 -
Gma16g00228 699 Gene3D Helix hairpin bin 390 454 - -
Gma16g00228 699 SMART cnmp_10 463 594 IPR000595 -
Gma16g00228 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 690 - -
Gma16g00228 699 Coils Coil 616 639 - -
Gma16g00228 699 ProSiteProfiles cAMP/cGMP binding motif profile. 463 547 IPR000595 -
Gma16g00228 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 8 690 - -
Gma16g00228 699 Pfam Ion transport protein 68 391 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma16g00228 699 Gene3D Jelly Rolls 461 581 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00228 Gma-Chr16 2446341 2457699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00228 1 689 Ion Channels AT5G53130 60.959 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00228 K05391 - gmx:100795201 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00228 16 2446341 2457699 Gma16g00228 16 2446341 2457699 ECH
Gma19g02406 19 52596643 52600693 Gma16g00228 16 2446341 2457699 PCT
Gma03g02362 03 48781642 48786026 Gma16g00228 16 2446341 2457699 PCT
Gma16g00228 16 2446341 2457699 Gma19g02406 19 52596643 52600693 PCT
Gma16g00228 16 2446341 2457699 Gma03g02362 03 48781642 48786026 PCT