Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00225 ATGGGAAAGCGCCTCCAAAACGCTACTTCCTCCGGCGGCGAGATTCCGCCGGAAAAGCGGATCCGCCGGAGCAAAACCATTTGCTCTTGCAACTCTCCTCGCCCTCCGTTTCTCTCTGCTCACTCCACTTTCTCCTGGTTCGAAGAAGACATTTGGACAGAGATTGCTAAGTTTCTGGATGGAAAATCTCTGGTGATGCTGGCAGCCACAAGCCGATGGTTCCGCCGTGCTATTATGGATGACGGCATATGGAAGTTCGTGTGTCTGCGTGATCTTCAGGTCCCACCCCCGGAATGCGTGGCATTCAGATGGTGCAAGCTGTACACGTCAACCTTTGATGGAAGCCACTCCTACATGTTCCGTCAACAAGAGAAACACATTGATTGGATGCGTATTGGCGCCTTTTCTTTTGATTCTTCTGTAGCCGTCCTGGCAGAGAGACTGATTCTTCCGGGGAAGATACGGAATGGAGAAACCATGGAAAAGATGTTGCGGTCTCAAGGTTGTTGCGTGCTAGACAATGTTAAAACTGGAATCTGGATAGCTGACCTGCAGCTTGTAAGATGCCCGGTTTGTGACCTCAATACTTGCGATGGAACAATGCAGACTTTAGATGCAAGGCACATAGAGCTATTCCTCTGCGAAGGCTTCCAAAATGGGAGCTGGGATTACCAGCTTGTAGGATCTCGTGATATAAAAAAACGAGCAGATGGGGCTGCTGGCGCCATTTTTGACATGAAACACCTAAAGGATTCTTCAACTTCGGCTGTATTTGATTACAAGTCATGGATTGGGAGAGCAAATGACTGGCAACCCAAGGCAATGATTGCTTTCCATGCCGTAGCTGTGAACACTAATTTACAAGAAAATGAAGGTCTCCATGTGAAATACCATGCTATGAGGGCAGGAGCCGATGGAGAAGTTGTTTCTATTAGAATCTCTCAACAGCTCCTCATCAACTACCTCACACAAAAGATACAAGTCTACGACCCTGATGATTGCCTACCCAAACGTCTTCTGAGCCTCAATATCTCAGGGTCACAATTCATTCCCATAGACTGCCTCAGTAATTCCACAAGTTTTGTATCAGCTATCCCTACACTGAGCTTGATCAATCCATTGAATGAGTCTTGCTATGTTATTACAAGGGTTTCAGTCCCAGTTTCAGGGCCAGAGCAGCAGTATGAGAAGAATTTCAGAGATGAGCTTATTGAAGATCTTCGATTAACGTGGGATACACCTGACTGCAAATATTGCGAATCGCGACAGCAATTGTGTGGGTTTGATCCAAATAACAACGGTCAACTCTTCTGCTTCTCTGGTTACCAAACAGGTACTTCAAGACGTGGAACCCAAGTTTTCAGAATCATCACACTGTGCATAGCTGGACCAGCAGCGGTCTTTGCAATTGTGATGGCATGTTGTGTGTGCTACAAGGACAGACTAGCCAACATTCGTAACAGTGCCATTACAAGGTCTGCACCTGCAGCTACAATATCGCCGGAGCCACAAATCACGACCACGGGTCTGGACGAGTCCACCATCGAGTCTTACGAGAAGGTGGTGCTCGGAGAGAGTCGACGAGTTCCGGGACCCAACAACAATGGATGCTGTTGGATATGCTTGTCGGAGTACAACAGCAAAGAGACCATAAGACTGATTCCTGAATGCAAACACTGCTTCCATGCAGACTGCATAGACGAGTGGCTTCGAATAAACACCACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCCTATTCATGTTACGTCCATTGACCCTTAA 1788 0.4748 MGKRLQNATSSGGEIPPEKRIRRSKTICSCNSPRPPFLSAHSTFSWFEEDIWTEIAKFLDGKSLVMLAATSRWFRRAIMDDGIWKFVCLRDLQVPPPECVAFRWCKLYTSTFDGSHSYMFRQQEKHIDWMRIGAFSFDSSVAVLAERLILPGKIRNGETMEKMLRSQGCCVLDNVKTGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLCEGFQNGSWDYQLVGSRDIKKRADGAAGAIFDMKHLKDSSTSAVFDYKSWIGRANDWQPKAMIAFHAVAVNTNLQENEGLHVKYHAMRAGADGEVVSIRISQQLLINYLTQKIQVYDPDDCLPKRLLSLNISGSQFIPIDCLSNSTSFVSAIPTLSLINPLNESCYVITRVSVPVSGPEQQYEKNFRDELIEDLRLTWDTPDCKYCESRQQLCGFDPNNNGQLFCFSGYQTGTSRRGTQVFRIITLCIAGPAAVFAIVMACCVCYKDRLANIRNSAITRSAPAATISPEPQITTTGLDESTIESYEKVVLGESRRVPGPNNNGCCWICLSEYNSKETIRLIPECKHCFHADCIDEWLRINTTCPVCRNSPSPSPIHVTSIDP 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00225 595 Pfam Wall-associated receptor kinase C-terminal 372 439 IPR032872 -
Gma16g00225 595 Pfam Ring finger domain 538 580 IPR001841 -
Gma16g00225 595 Gene3D - 37 130 - -
Gma16g00225 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 585 IPR013083 -
Gma16g00225 595 PANTHER F-BOX PROTEIN RMF 18 318 - -
Gma16g00225 595 SMART ring_2 538 579 IPR001841 -
Gma16g00225 595 ProSiteProfiles Zinc finger RING-type profile. 538 580 IPR001841 -
Gma16g00225 595 CDD RING-H2_EL5_like 538 580 - -
Gma16g00225 595 SUPERFAMILY F-box domain 41 108 IPR036047 GO:0005515
Gma16g00225 595 SMART ringv_2 537 580 IPR011016 GO:0008270
Gma16g00225 595 SUPERFAMILY RING/U-box 537 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00225 Gma-Chr16 2430646 2437724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00225 319 585 C3H Transcription Factor Family AT2G25410 37.458 2.43e-60 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00225 - - gmx:100797890 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00225 16 2430646 2437724 Gma16g00225 16 2430646 2437724 ECH
Gma07g00524 07 5044303 5046809 Gma16g00225 16 2430646 2437724 GST
Gma19g02408 19 52606419 52608358 Gma16g00225 16 2430646 2437724 PCT
Gma03g02366 03 48799544 48799987 Gma16g00225 16 2430646 2437724 PCT
Gma16g00225 16 2430646 2437724 Gma19g02408 19 52606419 52608358 PCT
Gma16g00225 16 2430646 2437724 Gma03g02366 03 48799544 48799987 PCT