Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00224 ATGATAGTGAAGCGGACGATGAAAACCGAAGCGTCGAACCTGAAACGTTGTGAGATTGAGGATTCCGAGAATGCGATTCGGAAGAAGCGTAGGGTGACCGGTTTTTACTCGCTGGGAGTGCCAGGGGATGCTGAATATTTCAGCAGCGGTTCTGGCTCATTGAGCAGCGAAGGTTCGTATTGGGGTGGTGGTGGTGAGGTTCAGTCCAATTCGAATTCCGTTCCGTTTAACCGGAAAATGGCGAAGGAGTCGCGCCTGCCACCATTGCTCCGGTCCTCGCGTGGTCATGCCCAGAAGATTCCGTCGAGGTGCAATGGCTCGGTCCTTGACGCCGCGGATGGAGACTCGAGCTTTGAAGATAATGGTAAGAGTTTTGTGGAGGATGGAAAGGGTGGCATTAGTGTGAAAGTGGAGAAGAGTGATAGTGTGTGTTATTCGTCGAGTGTGGGTAAAAGGACTGTTGTTAAGGCTGAGAGTAATACTTCTGGGATTAGTTTTGAGGGTGTGGACCAAAAGCCTATCGGTGAGAAGAGGAGAGAGGTTTACAAGCCGGAGGATTTTGCTTTGGGGGATATCGTTTGGGCTAAGTGTGGGAAGAGGTACCCGGCTTGGCCTGCTGTGGTGATCGATCCTGTCTTGGAGGCTCCGGAGTCCGTGCTCCGCTGTTGCGTTCCCGGTGCGCTTTGCGTGATGTTTTTCGGTTATTCAAAGAATGGAACCCAAAGGGACTACGCGTGGGTGAAGCAGGGAATGGTGTTCCCCTTCTCGGAGTTCATGGACAGGTTTCAGGGGCAGACCCGGTTGTACAAGAGCAAACCGAGTGACTTCCGCATGGCACTGGAGGAGGCAATGCTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAAGAAGAGAAGAAGTAACTCATGCAAATGCTCATCCTGATGGACTTATGGAGGCCACTGGTTCTTATGTTGATGAGGAATGCTACGGCCAGGATCAGGATACAAGGTATTGTGCTGGATGTGGTCTGATGTTTCCATGCAAAACCATGAAGAAAATTAAGGATTCAAATTGTGCACCCCGATTTTATTGCAAACATTGTTCTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAGGATTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGTGATGGGTGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATATCCAGCAAACTTTTCAAGGATCTGGAAAATACAGATTACTATTGTCCAGATTGCAAGGGAAAATTCAATTGTAAATTACCAGCATCACAAACATACAAGTCAAATATCGAATCAATAGAGAATACCCAAAAATCTATAATTCCCGAGAAAGTATTGGTGGTGTGCAATGGAATGGACGGATTTTACATCCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCTTGTGGTACAAGAAAGCAGACACTTAGTGAATGGGAAAAACATACAGGTTGCAGAGCGAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAATGCTACCACTGGAAAAATGGATGGCAGAAAACATTCCACTTGATGGAATACCCGAGCAGTTAGATCAACAGCAGGTGCTGGCCTTTTTACAAGAGAAGTATGAGCCTGTTAATGTAAAATGGACAAcagaaagatgtgctgtttgcagatgggttgaagattgggaagataacaaaattattatttgtaacagATGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAAAGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGCATGTCACATTTACCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAAATCATGAGGCCATGGAACCTGCCACGGGAATCCTTAAAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTGATCTGTGAACAGAGCCATGGTTCCTGCATAGCTTGTTGCAAGTGTTCTACTTATTTTCATGTGATGTGTGCATCAAGGGCAGGATATACAATGGAGTTGCATTCCATGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATATTGTGCAATTCACAGGGTCCCAAATCCAGATTCTGTACTGGTGGTACACACCCCCCTTGGGATTTTCTCTCCCAGAACTTCACTTCAAAATCAGAAGGGATGCTTCAGGGGATCAAGGCTAATTTCATCAAAGAATATAGAGCTTATTGAATCTTCAACCACTGAAAAGGACATAGTGGAGCCGCTGTCTGCAGCCAGGTGTCGTGTGTACCAAAGGTCTCCTAATAAGAGGGCTGATGTGCCAATAATTCACTTGCTGAGGGGACCCAGCCTTCATTCTTTAGGTGCAATAACTCAGTTGAACCACTTTAAGGATGCTGATGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCACCATTTATGGGAGATGGAAAAATTTAGAGTTTGCTTTGGAAAATCGGGCATTCATGGATGGGGTCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGTGCATGTAAGGCGTAGTGTTACTGATCTGAGGGAAGAAAAATACCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGTGAGGAAGTGGTAGTTGATGCAACAAACAGCGGCAATATAGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTATGGGTGATCAGGGGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGctggtgaagaactaacGTATGATTACTTGTTTGATCCAGATGAGCGGGATGAATTGAAAGTTCCTTGCCTTTGCAAAGCCCCTAATTGTAGGAGATTTATGAATTAG 2964 0.4332 MIVKRTMKTEASNLKRCEIEDSENAIRKKRRVTGFYSLGVPGDAEYFSSGSGSLSSEGSYWGGGGEVQSNSNSVPFNRKMAKESRLPPLLRSSRGHAQKIPSRCNGSVLDAADGDSSFEDNGKSFVEDGKGGISVKVEKSDSVCYSSSVGKRTVVKAESNTSGISFEGVDQKPIGEKRREVYKPEDFALGDIVWAKCGKRYPAWPAVVIDPVLEAPESVLRCCVPGALCVMFFGYSKNGTQRDYAWVKQGMVFPFSEFMDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGRREEVTHANAHPDGLMEATGSYVDEECYGQDQDTRYCAGCGLMFPCKTMKKIKDSNCAPRFYCKHCSKLRKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENTDYYCPDCKGKFNCKLPASQTYKSNIESIENTQKSIIPEKVLVVCNGMDGFYIPKLHLVMCKCGSCGTRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWMAENIPLDGIPEQLDQQQVLAFLQEKYEPVNVKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKKVQDFTSWVCRVCETPDVERECCLCPVKGMSHLPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPATGILKIPPNSFVKTCVICEQSHGSCIACCKCSTYFHVMCASRAGYTMELHSMEKNGTQITKKLIYCAIHRVPNPDSVLVVHTPLGIFSPRTSLQNQKGCFRGSRLISSKNIELIESSTTEKDIVEPLSAARCRVYQRSPNKRADVPIIHLLRGPSLHSLGAITQLNHFKDADESKVFTSFKERLHHLWEMEKFRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVHVRRSVTDLREEKYRSEGKDCYLFKISEEVVVDATNSGNIARLINHSCMPNCYARIMSMGDQGSRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRRFMN 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00224 987 ProSiteProfiles Zinc finger PHD-type profile. 553 604 IPR019787 -
Gma16g00224 987 CDD SET_SETD1-like 834 983 - -
Gma16g00224 987 Pfam PHD-zinc-finger like domain 609 721 - -
Gma16g00224 987 Pfam PHD-finger 371 424 IPR019787 -
Gma16g00224 987 ProSitePatterns Zinc finger PHD-type signature. 556 601 IPR019786 -
Gma16g00224 987 SUPERFAMILY SET domain 841 983 IPR046341 -
Gma16g00224 987 SMART PHD_3 666 722 IPR001965 -
Gma16g00224 987 SMART PHD_3 555 602 IPR001965 -
Gma16g00224 987 SMART PHD_3 371 423 IPR001965 -
Gma16g00224 987 PANTHER PHD FINGER PROTEINS 1 987 - -
Gma16g00224 987 ProSiteProfiles Post-SET domain profile. 971 987 IPR003616 -
Gma16g00224 987 CDD PHD_TCF19_like 372 422 - -
Gma16g00224 987 Pfam SET domain 856 961 IPR001214 GO:0005515
Gma16g00224 987 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 987 - -
Gma16g00224 987 SMART PostSET_3 971 987 IPR003616 -
Gma16g00224 987 SMART PWWP_4 187 256 IPR000313 -
Gma16g00224 987 CDD PHD_ATX3_4_5_like 555 601 IPR042011 -
Gma16g00224 987 SUPERFAMILY Tudor/PWWP/MBT 180 292 - -
Gma16g00224 987 ProSiteProfiles PWWP domain profile. 189 258 IPR000313 -
Gma16g00224 987 SUPERFAMILY FYVE/PHD zinc finger 369 430 IPR011011 -
Gma16g00224 987 Pfam PHD-finger 568 602 - -
Gma16g00224 987 Gene3D SET domain 826 987 IPR046341 -
Gma16g00224 987 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 551 604 IPR013083 -
Gma16g00224 987 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 427 IPR013083 -
Gma16g00224 987 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 723 IPR013083 -
Gma16g00224 987 ProSiteProfiles SET domain profile. 845 962 IPR001214 GO:0005515
Gma16g00224 987 Gene3D - 177 293 - -
Gma16g00224 987 SUPERFAMILY FYVE/PHD zinc finger 553 615 IPR011011 -
Gma16g00224 987 SMART set_7 845 968 IPR001214 GO:0005515
Gma16g00224 987 ProSiteProfiles Zinc finger PHD-type profile. 369 425 IPR019787 -
Gma16g00224 987 Pfam PWWP domain 190 286 IPR000313 -
Gma16g00224 987 ProSiteProfiles Extended PHD (ePHD) domain profile. 607 722 IPR034732 -
Gma16g00224 987 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 987 IPR025780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00224 Gma-Chr16 2420047 2427569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00224 328 396 EF-hand Containing Proteins AT5G28340 59.420 2.51e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma16g00224 zf-HC5HC2H_2 6.8e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00224 - - gmx:100797346 2035.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00224 16 2420047 2427569 Gma16g00224 16 2420047 2427569 ECH
Gma07g00523 07 5031313 5039542 Gma16g00224 16 2420047 2427569 GST