Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00221 ATGAAACCAACCTTCTCTTATGAACATTTCACTTCATTCTGCTCCCTCCTCCCTCTGAAACCTCTTTCTCTGCCTCATTTTTATACCTATCTATTTCATAATACATCTTTGGGTTATATACCCAACAATGCATTAAGGGTCTTTTTTTTCTTCTTTTCTCTCTTATCCAATCATCCAAGTCCTATAAAAAGCATCTATATATATATTGATATTGCTTTGGAGTGGAAAATGGCACCAAGAAACAGTCGCGGAAAGCCCAAGGGAGAGAAGAAAAAGAAGGAAGAAAAGGTTCTTCCGGTTGTCATAGATATCACTGTGAAGCTCCTCGATGAAACTCATGTTCTGAAGGGAATATCAACGGACAGAATTATAGATGTTCGTCGTCTTCTATCGGTGAATACGGAGACGTGTTATATCACAAATTTTTCCCTGTCGCATGAGGTAAGAGGGCCACGTCTGAAGGACACGGTGGACGTGTCCGCACTGAAGCCCTGCCTCCTCACTTTAGTTGAAGAGGATTACGATGAAGACCGAGCAGTGGCGCACGTGCGAAGACTCCTCGACATCGTCGCCTGCACCACGAGCTTCGGTCCGTCGTCTCTGCCGCCGCCGAAGAATGATTCTGGCACCGTCCCGAAGTCCGGCAAGCCTGAGGCGCCGCCGGCGAAGCAATCTGCGAAAGATGCGGAGGCGGCGGCGGCTACGGTGGACATTGAAGGCGAGATAAGCCACTCGTGCCCTAAGCTGGAGAACTTCTACGAGTTTTTCTCTCTCTCACACCTCACTGCACCAATCCAATATGTGAAGAGAGGTTCGAGGAGGCGCGTGGAGGAGATTTTGGAGGAGGATTATCTGTTCTCGCTGGATGTGAAGGTGTGTAACGGGAAAGTGGTGCACGTTGAGGCATGCAGAAAGGGATTTTACAGCGTTGGGAAGCAGCGGATACTGTGCCATAATCTGGTTGATCTCTTGAGACAGCTTAGCAGAGCTTTTGATAATGCTTTCGATGATCTCTTGAAGGCATTTTCAGAACGTAACAAGTTTGGGAATCTCCCATATGGCTTCAGAGCCAACACGTGGCTTGTTCCTCCTGTTGCTGCACAATCACCCTCATATTTTCCTCCTCTTCCCGTGGAGGATGAAATGTGGGGAGGGAATGGGGGTGGTCTTGGAAGAGACGGAAAGTATGATTTGGTTCCTTGGGCTAATGAGTTTTCATTTATTGCATCCATGCCTTGCAAGACAGCGGAAGAAAGACAAGTTCGTGATAGAAAAGCATTTCTTCTGCACAGCCTGTTTGTCGATGTTGCCATTTTCAGAGCAATAAAGGCCATTAAACATGTTATGGAAGAGCCGAATTTTAGCTGTTCAGTTGTAGAAAATAATATTATTTACACTGAGAGAGTGGGTGACTTGAATATCAACGTCTTGAAAGATGGTTCTGTTGCAAGCTGTAAGATTGATACTAAAATTGACGGAGTTGAAGCTACTGGAGTGAATCAAAAGGATCTACTAGAACGAAATCTAATGAAAGGAATCACTGCTGATGAAAATACTGCTGCCCATGATATTACCACTTTAGGTGTAATTAATGTAAGATATTGTGGTTATGTGGTCGTTGTGAAAGTTGAGGGAGGAGTTAATGAAAATGTTGACTCTCCATCTCAACAAAATATTGAATTGTTTGATCAGCCAGAGGGTGGTGCCAACGCACTCAATATTAACAGTCTGAGATTACTTCTTCACAACACAACTTCACCAGAAAACAATAAACCAGTGTCTCAGATACAAACGTTTGAGAGTGAAGAGCTTGGTGCTTCTCATGCTTTTGTGGAGAAGCTGATTAAAGAAAGTCTTGCTAAGCTTGAGGAAGAAGAACCAGGTATTGACTATTTTGTAAGATGGGAACTTGGAGCTTGCTGGGTACAACATTTGCAAGACCAAAATAATACAGAAAAAGATAAGAAACCATCATCGGAGAAGGCTAAGAATGAAATGAAGGTTGAGGGTCTTGGGAAACCCCTTAAAGCCCTAAAGAATTATAAAAAGAAATCTGATTCAAGCAATAATAATTCTGCAACTGAATATTCAAAGTTTAATCGTGAGGCTGAAAGCTCTCCATTGCCCTCTATTGAATCCCAACATGAAACTACAGAAGCTGAGAATGAGCTTGTTCTGAAAGGGATGCTATCTGATGAAGCTTTTACCCGATTAAAAGAATCGGGAACTGGACTTCACTGCAAGTCTATGCATGATTTGATTGAGTTATCTCGAAAATATTACACAGACGTTGCTCTCCCAAAATTGgtagccgattttggctcattggaactctcaccagttgatggacgcactctaactgattttatgcatactcgGGGTCTACGAATGCATTCTCTTGGACATGTTGTCAAGCTTTCAGAAAAGCTTTCACATGTCCAATCACTTTGTATTCATGAGATGATAGTTCGAGCTTTTAAGCACATCCTGCGGGCAGTAATTTCTGCTGTTGACAAGGAGAAAATGGCTTCATCAATTGCTGGTGCATTGAATTTGCTGCTTGGTGTTCCTGAAAATAGAGAATCAGATAAATCACGTGAAGTTCACCCATTGGTGTGGAAATGGCTAGAGTTGTTTTTGAAGAAGCGATTTGATTGGGATCTTAACAAGTTGAATTACAAGGACGTGAAAAAATTTGCAATTTTACGTGGCTTGTGTCACAAGGTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCCCCAATTCCCTTTCAAAAATCTGATATTGTCAGCTTGGTCCCTGTTCACAAGcaagcagcatgctcatctgcagatggaaggcagctcctagagtcatccaaaactgctttagacaagggaaagcttgaggatgcagttacctatggcacaaaggctcttgctaatctggtagcagtttgtggtccctatcatcggatgacagcgggagcctacagcctccttgctgtagttttatatcatactggagacttcaatcagGCTACCATTTATCAACAAAAAGCTTTGGATATCAACGAGAGGGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACAGAGCTGGCTCTGAAGTATGTGAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCATCCAAACACTGCTGCTACTTACATTAATGTGGCTATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGACAGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCATTGAGTGTCCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCTCCGATGACTTGCGCACACAGGATGCTGCGGCTTGGCTTGAGTATTTTGAATCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCCAGCAAAGGCCATCTTAGTGTGTCAGATTTGCTTGACTACATTAATCCTAATACTAAAGGGAGAGATGCAGCAGCAAAGAGAAGAAGCCAGATAACAAAGGTGAGAGCAACATCTTACCAGAATACTGGCATGTCAAGTTCTGATGAATCTTCAAAAGAAATTCCAAAAGAGGCTTCAGATGAAGAGGTACAAATATCCGAACCAGTAGGTAGTGCAGATTCTGAGAAGGAGAGCAACTCTGGACCTGATTTGGAACAAGCTATTTTAAAGCAAATATCGGATGAAAAGCTACAAATTTATGATGAAATCTTCTCTGAAGCACATGCTGAAGGAGAGGATGGATGGCAATCAGTTCAAAGACCAAGATCAGCTGGCTCATATGGCCGGAGACTGAAGCAGAGACGGGCAGCACTTGGCAAAGTTTATAGTTATCACAAGAATGTGGAAGTTGGCACAGAATCTCCTTTTGTAAGGAGTCCTAATCCGAATAGTAGGTATTATTTCTTGAAGAAACGAACAATTTCCCATGGGAGTTATACAGATGATCATACTACAAACATCACCCAAGGCAATAAATTTGGAAGGAAAGTAGTCAAAGCTGTTACATACAGGGTCAAGTCCATGCCCTCAACTTCAAAGCCTTGTGCAAATGAGACATTAGAAAATGGGGATAAGCTGCTCAGTTCTCTTCCAGAACCTGATCCAATTGATGCTAATCCAGTTAAGAATTCTAAAGTTAGTCTCGGAAAGTCTCCTTCATACAAGGAAGTGGCCTTAGCTCCTCCTGGGACAATCTCCAAGTTTCAGGTCTATAATCCTCAAAGTGATATTTCTGTTAGCAGTGAACATGATAGTGGAAAACACGAAGAGGAAGTTGAAGCTAATAGAAATGTTGATGTTGATCCAACCCTGATAGAGGTAAATGATACAGTTAAAGAGAAGAATAATGATTCTTTATCAGATTCTGTAGATGATTCACTGGATGATACTGGAGTGGCTATTGAGGGGAAAGAAGAAACTGAGTTGATTGTTGCTGTGCAAGATAATTGTATGAGTGCTGAGGGGCAATCGGGAGATGTTGAGGCTCAAGGAGCAGTTGATAGCAGCATATTGATTCATGCAGTAGATGATCATGTGGATTCTTACAAGCAAGAACTTGATACAAGTAATTCATCTGGCAGTTTAGAACCTAGTGCCAATACAAATCCCATTTCTCAGGGTGGTGAGGATTTAAGGGTCAATGTATCACCATCAAGTCAGAGTCGTACCGGGGGCATCCCATATAAGAAATTGTCTGCATCTGCAGCTCCATTCAACCCATCACCTGCCATTGCACGTGCTGCACCAATTGCCATGAATATGACTCTTCCTTCTGGTCCTAGAGCAGTTCCTGCAATTGGCCCCTGGCCAGTAAACATGAATGTTCATCCTGGACCTACTACTGTGCTACCCGCAGTTGCCCCAATGTGCTCCTCTCCACACCATGCATATCCATCACCTCCAACAACACCAAACATGATGCAACCACTGCCATTTATGTATCCTCCTTTTACTCAACCTCAATCAGTATCGCCTAGCAACTTTCCAGTCACTAACAGTGCCTTTCATGCCAATCACTTCACATATTTGAACCCCACAATATCTAAGTTTGGTCCCAGTGCTGTTTGGCCTGGTTGTCATCCTGTAGAATTTCCTCTTCCAGTACCTATTGTTGAACCAATCCCTGATCCCATTTCAGAGTCACAAGCTCTGTGTCATGGTTTGGAAAGTCCAAGTTCGGCTTCAGTTCTTCCTGAGGACATTGATAATATTGGGGATTCCAATCAAGTGGTAAAAACTTTATCATCAGAGATAAGTGAAGATGAAGCAGTGAGATCTGGTTCAGAAAGTATAAAAGAAAATGGTAATATGAATTTTCACGGGTCTGAAAATGCTGGGAACAAGCAACATCAAAATATTGCTTCAAATGGCAACTCTAGCAGTAGTGGAACTAACATGGATGGTGAGAAAACCTTTAGCATTTTGTTTCGGGGAAGAAGAAATCGAAAGCAGACTCTGAGAATGCCAATAAGTTTGCTTACTCGACCTAATGGCTCACAGTCATTTAAGCTCAAGTTTTATAGCTGCACTATCTTTTGGGAGGTTTCTGATATATGTCTCTATTTAAGATGGAGGATTGGAGGTTTTTATTCATCAATATAA 5772 0.4016 MKPTFSYEHFTSFCSLLPLKPLSLPHFYTYLFHNTSLGYIPNNALRVFFFFFSLLSNHPSPIKSIYIYIDIALEWKMAPRNSRGKPKGEKKKKEEKVLPVVIDITVKLLDETHVLKGISTDRIIDVRRLLSVNTETCYITNFSLSHEVRGPRLKDTVDVSALKPCLLTLVEEDYDEDRAVAHVRRLLDIVACTTSFGPSSLPPPKNDSGTVPKSGKPEAPPAKQSAKDAEAAAATVDIEGEISHSCPKLENFYEFFSLSHLTAPIQYVKRGSRRRVEEILEEDYLFSLDVKVCNGKVVHVEACRKGFYSVGKQRILCHNLVDLLRQLSRAFDNAFDDLLKAFSERNKFGNLPYGFRANTWLVPPVAAQSPSYFPPLPVEDEMWGGNGGGLGRDGKYDLVPWANEFSFIASMPCKTAEERQVRDRKAFLLHSLFVDVAIFRAIKAIKHVMEEPNFSCSVVENNIIYTERVGDLNINVLKDGSVASCKIDTKIDGVEATGVNQKDLLERNLMKGITADENTAAHDITTLGVINVRYCGYVVVVKVEGGVNENVDSPSQQNIELFDQPEGGANALNINSLRLLLHNTTSPENNKPVSQIQTFESEELGASHAFVEKLIKESLAKLEEEEPGIDYFVRWELGACWVQHLQDQNNTEKDKKPSSEKAKNEMKVEGLGKPLKALKNYKKKSDSSNNNSATEYSKFNREAESSPLPSIESQHETTEAENELVLKGMLSDEAFTRLKESGTGLHCKSMHDLIELSRKYYTDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMHSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISAVDKEKMASSIAGALNLLLGVPENRESDKSREVHPLVWKWLELFLKKRFDWDLNKLNYKDVKKFAILRGLCHKVGIELVPRDFDMDSPIPFQKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALANLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGSDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNTKGRDAAAKRRSQITKVRATSYQNTGMSSSDESSKEIPKEASDEEVQISEPVGSADSEKESNSGPDLEQAILKQISDEKLQIYDEIFSEAHAEGEDGWQSVQRPRSAGSYGRRLKQRRAALGKVYSYHKNVEVGTESPFVRSPNPNSRYYFLKKRTISHGSYTDDHTTNITQGNKFGRKVVKAVTYRVKSMPSTSKPCANETLENGDKLLSSLPEPDPIDANPVKNSKVSLGKSPSYKEVALAPPGTISKFQVYNPQSDISVSSEHDSGKHEEEVEANRNVDVDPTLIEVNDTVKEKNNDSLSDSVDDSLDDTGVAIEGKEETELIVAVQDNCMSAEGQSGDVEAQGAVDSSILIHAVDDHVDSYKQELDTSNSSGSLEPSANTNPISQGGEDLRVNVSPSSQSRTGGIPYKKLSASAAPFNPSPAIARAAPIAMNMTLPSGPRAVPAIGPWPVNMNVHPGPTTVLPAVAPMCSSPHHAYPSPPTTPNMMQPLPFMYPPFTQPQSVSPSNFPVTNSAFHANHFTYLNPTISKFGPSAVWPGCHPVEFPLPVPIVEPIPDPISESQALCHGLESPSSASVLPEDIDNIGDSNQVVKTLSSEISEDEAVRSGSESIKENGNMNFHGSENAGNKQHQNIASNGNSSSSGTNMDGEKTFSILFRGRRNRKQTLRMPISLLTRPNGSQSFKLKFYSCTIFWEVSDICLYLRWRIGGFYSSI 1923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00221 1923 Pfam Tetratricopeptide repeat 1073 1147 - -
Gma16g00221 1923 Pfam Tetratricopeptide repeat 989 1059 - -
Gma16g00221 1923 ProSiteProfiles TPR repeat profile. 990 1023 IPR019734 GO:0005515
Gma16g00221 1923 ProSiteProfiles Clueless (Clu) domain profile. 379 656 IPR025697 -
Gma16g00221 1923 SUPERFAMILY Hypothetical protein c14orf129, hspc210 285 347 IPR023231 -
Gma16g00221 1923 CDD CLU-central 780 920 IPR033646 -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1573 1616 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1471 1486 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1211 1271 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 198 230 - -
Gma16g00221 1923 Pfam Mitochondrial function, CLU-N-term 120 190 IPR028275 -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1300 1319 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1221 1239 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1829 1855 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 648 672 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 684 715 - -
Gma16g00221 1923 Pfam Translation initiation factor eIF3 subunit 135 778 919 IPR033646 -
Gma16g00221 1923 SUPERFAMILY TPR-like 1027 1151 IPR011990 GO:0005515
Gma16g00221 1923 Gene3D Tetratricopeptide repeat domain 950 1062 IPR011990 GO:0005515
Gma16g00221 1923 Gene3D Tetratricopeptide repeat domain 1063 1195 IPR011990 GO:0005515
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1575 1616 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1467 1486 - -
Gma16g00221 1923 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 77 1903 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 1414 1438 - -
Gma16g00221 1923 MobiDBLite consensus disorder prediction 648 720 - -
Gma16g00221 1923 SUPERFAMILY TPR-like 956 1061 IPR011990 GO:0005515
Gma16g00221 1923 SMART tpr_5 1032 1065 IPR019734 GO:0005515
Gma16g00221 1923 SMART tpr_5 990 1023 IPR019734 GO:0005515
Gma16g00221 1923 SMART tpr_5 1074 1107 IPR019734 GO:0005515
Gma16g00221 1923 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 77 1903 IPR027523 GO:0006996
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00221 Gma-Chr16 2379476 2396300 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00221 K03255 - gmx:100784117 3477.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00221 16 2379476 2396300 Gma16g00221 16 2379476 2396300 ECH
Gma07g00522 07 4996207 5012452 Gma16g00221 16 2379476 2396300 GST
Gma15g01319 15 11710089 11712171 Gma16g00221 16 2379476 2396300 PCT
Gma16g00221 16 2379476 2396300 Gma15g01319 15 11710089 11712171 PCT