Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00214 atgacttttggGGGTTCTGATGAGGATATTTATGCTTTTGGGTTGGACCGTGTTACCGACACGGAAATGTTCTTTCTTGTTTCCATGTATTTCTCTTTTCCCCGGGGGCTTGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAACATTTGTGGATTTCGGATATGTTCAAATCTGGTTTTGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGGATTCAGACTGTTGTTTTGGTGCCTACTGATTTGGGGGTGGTGGAGATGGGGTCTGTGAGGACGGTAGATGAGAGCTTTGAGTTGTTGCAGGCTGTCAAATCTGTGTTTTCTGCACCTTTGGTCCTCCCCAAGGTTAAGCCAACTGCACCATTGGATTTGGTGAGTGAAAAGAGAGATGGGAATGAGAGTGCAAATGCTCTTTTTTGTGGTTTGGCAATTGTGGATAAGAATAAGAATAACAACAGCCACAGTAATAACAGGGTAGAGGGAGTTGGTGTTCCAAAGATTTTTGGGCAGGATTTGAATTGTTCCACTCAATTTAGAGAAAAACTGGCTGTGAGGAAAATGGAGGAGAGGCCATGGCCGTGGGGAGGTCATCCCCCCAACGGAAATAGTATTGGCTTTCCTAATGGTGTTCATGGTTCTAGTTGGGGGGCTGGTGAAGTTGTGAGGCAGCTTGGTCATCCTGAAATTCTTGCTCCTAGGTTGGCCAGCTCTGGAGCTTTGCCGGATGTTGCCAATAGTGCGAAGAATGATTTTGTGCATAACAACTTTCAGCAGCAACAGCTGCCTGTACAGATGCAATTTGATTTCTCAAGAGCCACTTCAAGGGCTTCTGAGAGATCAATCATTGCGGAGTCTGAGATTTCTGATATTAAGGCGTCGTGCAAGGAGGAGAGAATGAGTATTGCCGATGACAGGAGGCCGAGGAAGCGGGGGAGGAAGCCGGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCTGAGAGGCAAAGGCGGGAGAAGCTGAACCAGCGATTCTATGCACTGCGAGCCGTTGTTCCAAATATCTCTAAGATGGATAAGGCATCGCTGTTGGGAGATGCTATTGCTTACATCAACCAGCTTCAAGCAAAACTCAAGACCATGGAGTTTGAGAGAGAGAGGTTTGGAAGCACTTGTGTGGATGGACCAGTATTGGATGTCAATGCAGAAGTAGAAAAAAATCATCACAACGGAGCTCCTGATATGGACGTGCAAGCTGCACAGGATGGGGTCATTGTAAAGGTGAGCTGTCCTATCGATGTTCATCCTGTTTCAAAAGTCATTCAAACCTTCAAAGAGGCAGAAATTGGTGTTGTTGAATCAAGACTTACTGTTGCAAACGATACTGTTTTCCATACATTTGTAGTTAAATCCGAAGGACCTGATCAAGTAACAAAGGATAAGTTGATTGCATTGTTTTCCAAAGAATCCAACTTCATACAAACACTATGA 1479 0.4517 MTFGGSDEDIYAFGLDRVTDTEMFFLVSMYFSFPRGLGGPGKCFASGKHLWISDMFKSGFDYCVRSFLAKSAGIQTVVLVPTDLGVVEMGSVRTVDESFELLQAVKSVFSAPLVLPKVKPTAPLDLVSEKRDGNESANALFCGLAIVDKNKNNNSHSNNRVEGVGVPKIFGQDLNCSTQFREKLAVRKMEERPWPWGGHPPNGNSIGFPNGVHGSSWGAGEVVRQLGHPEILAPRLASSGALPDVANSAKNDFVHNNFQQQQLPVQMQFDFSRATSRASERSIIAESEISDIKASCKEERMSIADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINQLQAKLKTMEFERERFGSTCVDGPVLDVNAEVEKNHHNGAPDMDVQAAQDGVIVKVSCPIDVHPVSKVIQTFKEAEIGVVESRLTVANDTVFHTFVVKSEGPDQVTKDKLIALFSKESNFIQTL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00214 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 385 IPR036638 GO:0046983
Gma16g00214 492 Gene3D - 314 385 IPR036638 GO:0046983
Gma16g00214 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 370 IPR011598 GO:0046983
Gma16g00214 492 MobiDBLite consensus disorder prediction 299 332 - -
Gma16g00214 492 PANTHER MYC 1 487 IPR045084 GO:0003700|GO:0006355
Gma16g00214 492 CDD bHLH_AtAIB_like 318 383 - -
Gma16g00214 492 Pfam Helix-loop-helix DNA-binding domain 325 371 IPR011598 GO:0046983
Gma16g00214 492 SMART finulus 327 376 IPR011598 GO:0046983
Gma16g00214 492 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 15 109 IPR025610 -
Gma16g00214 492 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00214 Gma-Chr16 2329955 2331693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00214 3 491 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 46.124 7.56e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma16g00214 bHLH-MYC_N 3.4e-30 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00214 - - gmx:100804434 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00214 16 2329955 2331693 Gma16g00214 16 2329955 2331693 ECH
Gma07g00515 07 4947616 4949038 Gma16g00214 16 2329955 2331693 GST
Gma19g02418 19 52666677 52669073 Gma16g00214 16 2329955 2331693 PCT
Gma03g02374 03 48860531 48861949 Gma16g00214 16 2329955 2331693 PCT
Gma16g00214 16 2329955 2331693 Gma19g02418 19 52666677 52669073 PCT
Gma16g00214 16 2329955 2331693 Gma03g02374 03 48860531 48861949 PCT