Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00213 ATGGAGCAAGAGCTTCAACGCAACAGTGTCCACGACGaCGAAGCCGCCACCACCACGAGCTCCGGCGACAAGCCCGCCACCCCTCGCGGCGGCGGAACCCGACACCCCCTCTTCCGCGGCGTTCGCAAGCGCCGCTGGGGCAAATGGGTCTCCGAAATCCGGGAGCCGAGGAAAAAGTCACGCATATGGCTCGGCTCCTTCCCGGCGCCGGAGATGGCGGCCAAGGCCTACGACGTCGCCGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAACTTCCCCGACGAGGTCCACCGTCTTCCGCTGCTCCCCTCCGCCTGCACCGCCCGCGACATCCAGGCCGCCGCCGCCAAGGCCGCCCACATGATGATAGTCCAGGCCGCCTCTGTCACCGCCGACTCGCCGGAGAAAAGCAGCAGCATTACCTCCGACTGCGGCGACGGTGGCGGTGGAGACGACTTCTGGGGCGAAATTGAGCTGCCAGAGTTGCTCAACGCCAAGTGGTGGGCCTCCGACCACGACGTCACGCCGTGGCCCGAGTCCGAGCTCCCGCCCCAGCAGCCCTTCACCACGGCGTGCTTGTAG 585 0.6769 MEQELQRNSVHDDEAATTTSSGDKPATPRGGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPLLPSACTARDIQAAAAKAAHMMIVQAASVTADSPEKSSSITSDCGDGGGGDDFWGEIELPELLNAKWWASDHDVTPWPESELPPQQPFTTACL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00213 194 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 194 - -
Gma16g00213 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 194 - -
Gma16g00213 194 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Gma16g00213 194 CDD AP2 36 95 IPR001471 GO:0003700|GO:0006355
Gma16g00213 194 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Gma16g00213 194 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Gma16g00213 194 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Gma16g00213 194 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Gma16g00213 194 MobiDBLite consensus disorder prediction 12 26 - -
Gma16g00213 194 MobiDBLite consensus disorder prediction 1 39 - -
Gma16g00213 194 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Gma16g00213 194 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00213 Gma-Chr16 2307728 2308635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00213 33 164 AP2-EREBP Transcription Factor Family AT1G01250 65.152 5.96e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma16g00213 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00213 K09286 - gmx:100802845 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00213 16 2307728 2308635 Gma16g00213 16 2307728 2308635 ECH
Gma07g00514 07 4918365 4919238 Gma16g00213 16 2307728 2308635 GST
Gma19g02419 19 52682584 52683273 Gma16g00213 16 2307728 2308635 PCT
Gma03g02375 03 48872285 48872839 Gma16g00213 16 2307728 2308635 PCT
Gma16g00213 16 2307728 2308635 Gma19g02419 19 52682584 52683273 PCT
Gma16g00213 16 2307728 2308635 Gma03g02375 03 48872285 48872839 PCT