Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00211 ATGGCACATCTGGGGTGTTGTAATCTTGGGGGCCCTGGGAGTAGTGGAACTTCTCTACCGGAAAAAGGTTTGAAGGATGATGATCTCTATAGAGAGCTATGGAAGCTGTGTGCAGGGCCATTGGTGGATGTTCCTCGTACTGGAGACAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCTACGGATCAGGAATTGAACCAGGAAATTCCCCATTTCAATCTCCCGGCCAAGATTTTTTGCCGTGTTGTGAACATTCAGTTGTTGGCGGAACAAGACACTGATGAGGTTTATGCTTGCATCGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTACAAATCCTGATCCAAATATTTCTGAGCCCCCAAAACAGAAGTTTCACTCATTTTGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCAGTTTTGCGGAAGCATGCTACTGAGTGCCTGCCTGCATTGGACATGACTCAAGCAACCCCTACTCAGGAGTTGGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCATATATATAGGGgtcaaccaaggaggcacttacttacaactggctggagtacatttgttgcatctaaaagattggttgctggagatgcttttgtgtttttaagGGGAGAGCATGGGCAATTGAGAGTTGGAGTTAGACGTTTAGCGCGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTCATGACTCGTACCATGTTTTTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTGGTTTGAACAAATATCTAGAGGCAGTCAACAATAAGTTTTCACTCGGCATGCGATTCAAGATGAGATTCGAGGGAGATGACTCACCTGAGAGAAGGTTTTCAGGTACTATTGTTGGGGTTGGAGACGTGTCTGCAGGATGGTCAAATTCACAGTGGCGCTCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGGCCAGATAGGGTTTCTTGCTGGGAGATAGAGCCTTTTGTAGCTTCTACTGCTTTGAATGTCACACAACCAGCAGTGAAGGGTAAAAGGTCTAGGCCTGCTGATGTATCGTCTTCTGCTGCTTCAGGTTTCTGGTATCATGGTTCTTCCAATGAGCTTAGTCAATTAGGTGCTGCCACTGCTGAAGTCCAAAGCAAGGAAAATCAGGTTGTTCCATGTTCTCTGAGGCAGAAAGACATTATTAATAGCAATCCAATTGATGCTAATAACTCTAGCATCAGCTCTAGAGTCCGGATGGAAGGAGTATGGCCTTCTTCACCACATTTGAATGTCACTCCAAACCTTTTTTCTGATCCCAATAACAACAGTGTTTTGGCACGATCACCGATCTCTGGTTATCTTAATGTTCCATCTAGATCAAGTGATGGTCCCACATGTGAGCATGTGGAAGACGGGAAAAAGATTGAGAATTCCCTTGATTGCTGGTTATTTGGAGTTAATTTGACTAACAATTGTAGCAATGTTATAATTACTACTCCTTCAGAGAGGGAACTGAGAGGTCCAATAAGCTCAAGTGTTGCTCCTAGTGGTCCCAAAGAATCTATTCCTGCAGCTGCATGTGAAACTGAGAGGGTTCAGACTCCCAACTATTCACTGTCCAACAAGGGGCAGAAGCAAATTATTTCTGAGGCATCACCAAATGAGTGGCAGAACAAGCAGGCCACTGTACCATCCATGAGGACGCGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCGTTTGACTTGACCACATTGAGTGGCTATGATGATCTCATAGAAGAACTCGAGAAATTGTTTGAGATCAGAGGAGAGTTGCATTCACAAGACAAATGGGCTGTTACTTTCACGGATGATGAAAATGACATGATGCTCGTGGGTGATGATCCATGGCCGGAGTTCTGCAACATGGTGAAGAGGATTTTCATTTGTTCACGGGAGGACTTGAAGAAGATGAAATGCTGCAAGCTACCTGCTTCTTCATCAGAGGTTGAAGAGGTTCTATTGAGTCCAGATTCACAGAATAGGGATGAGACTCAACAGTCTCACATGCCTTAG 2151 0.43 MAHLGCCNLGGPGSSGTSLPEKGLKDDDLYRELWKLCAGPLVDVPRTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPAKIFCRVVNIQLLAEQDTDEVYACIALLPESDQTEPTNPDPNISEPPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPALDMTQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSLGMRFKMRFEGDDSPERRFSGTIVGVGDVSAGWSNSQWRSLKVQWDEPATIPRPDRVSCWEIEPFVASTALNVTQPAVKGKRSRPADVSSSAASGFWYHGSSNELSQLGAATAEVQSKENQVVPCSLRQKDIINSNPIDANNSSISSRVRMEGVWPSSPHLNVTPNLFSDPNNNSVLARSPISGYLNVPSRSSDGPTCEHVEDGKKIENSLDCWLFGVNLTNNCSNVIITTPSERELRGPISSSVAPSGPKESIPAAACETERVQTPNYSLSNKGQKQIISEASPNEWQNKQATVPSMRTRTKVQMQGVAVGRAFDLTTLSGYDDLIEELEKLFEIRGELHSQDKWAVTFTDDENDMMLVGDDPWPEFCNMVKRIFICSREDLKKMKCCKLPASSSEVEEVLLSPDSQNRDETQQSHMP 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00211 716 Pfam Auxin response factor 260 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma16g00211 716 ProSiteProfiles PB1 domain profile. 596 677 IPR000270 GO:0005515
Gma16g00211 716 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
Gma16g00211 716 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Gma16g00211 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma16g00211 716 PANTHER AUXIN RESPONSE FACTOR 11 19 693 - -
Gma16g00211 716 Gene3D - 592 684 - -
Gma16g00211 716 MobiDBLite consensus disorder prediction 697 716 - -
Gma16g00211 716 Gene3D - 295 367 - -
Gma16g00211 716 SUPERFAMILY DNA-binding pseudobarrel domain 122 263 IPR015300 -
Gma16g00211 716 SMART B3_2 134 236 IPR003340 GO:0003677
Gma16g00211 716 Pfam AUX/IAA family 637 678 IPR033389 -
Gma16g00211 716 Pfam AUX/IAA family 588 632 IPR033389 -
Gma16g00211 716 Gene3D - 131 235 IPR015300 -
Gma16g00211 716 CDD B3_DNA 132 234 IPR003340 GO:0003677
Gma16g00211 716 SUPERFAMILY CAD & PB1 domains 592 672 - -
Gma16g00211 716 MobiDBLite consensus disorder prediction 690 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00211 Gma-Chr16 2259827 2264482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00211 29 683 B3 DNA Binding Superfamily AT4G23980 55.000 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma16g00211 B3 9.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00211 K14486 - gmx:100795763 1438.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00211 16 2259827 2264482 Gma16g00211 16 2259827 2264482 ECH