Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00203 ATGGGAAGGGCTCCTTGTTGTTCCAAAGTGGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACCAAGTATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCAGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGGAACATAGCACCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGAAACAGATGGTCCCTCATAGCAGGAAGGTTACCAGGGAGAACAGACAATGAAATAAAGAACTACTGGAACACCCATCTAAGCAAAAAGCTGAAAATTCAAGGAACAGAAGACACAGACACACACAAAATGTTAGAGAATCCTCAAGAAGAGGCTGCAAGTGATGGTGGCAACAACAACAAAAAGAAGAAGAAGAAGAAGAACGGTGGCAAAAAGAACAAGCAGAAGAACAAAGGCAAAGAAAATGATGAGCCGCCAAAGACACAAGTTTACCTACCAAAACCAATTAGAGTGAAGGCAATGTATTTACAAAGAACGGATAGTAACACCTTCACCTTTGATTCCAATTCAGCTAGTGGATCAACAAGCCAAGAGAAGGAGGAAAGCCCCGTGACAAAAGAATCAAACGTGGTTAGTGAAGTTGGTAATGTGGGAGAAGAAAGTGATGGTTTTGGCTTCTTCAGTGAGGACCATGACTTAGTCAACGTCTCAGATATTGAATGCCACTCTTATTTTCCCACAGATCATGGCAACCTACAGCAATTGTATGAAGAATATTTCCAGCTCTTGAACATGGACCATGGCCAATTCGAACTGAATTCATTTGCAGAATCTTTATTAGATTAA 882 0.4093 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNIAPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKIQGTEDTDTHKMLENPQEEAASDGGNNNKKKKKKKNGGKKNKQKNKGKENDEPPKTQVYLPKPIRVKAMYLQRTDSNTFTFDSNSASGSTSQEKEESPVTKESNVVSEVGNVGEESDGFGFFSEDHDLVNVSDIECHSYFPTDHGNLQQLYEEYFQLLNMDHGQFELNSFAESLLD 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00203 293 MobiDBLite consensus disorder prediction 145 159 - -
Gma16g00203 293 CDD SANT 72 112 IPR001005 -
Gma16g00203 293 MobiDBLite consensus disorder prediction 195 222 - -
Gma16g00203 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma16g00203 293 CDD SANT 16 61 IPR001005 -
Gma16g00203 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma16g00203 293 PANTHER MYB TRANSCRIPTION FACTOR 1 284 - -
Gma16g00203 293 Gene3D - 14 66 - -
Gma16g00203 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma16g00203 293 Gene3D - 70 132 - -
Gma16g00203 293 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma16g00203 293 MobiDBLite consensus disorder prediction 195 211 - -
Gma16g00203 293 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Gma16g00203 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma16g00203 293 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 284 - -
Gma16g00203 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma16g00203 293 SMART sant 13 63 IPR001005 -
Gma16g00203 293 SMART sant 66 114 IPR001005 -
Gma16g00203 293 MobiDBLite consensus disorder prediction 133 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00203 Gma-Chr16 2184881 2186262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00203 1 132 MYB Transcription Factor Family AT5G49330 68.182 7.38e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma16g00203 Myb_DNA-binding 9.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00203 K09422 - gmx:100101857 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00203 16 2184881 2186262 Gma16g00203 16 2184881 2186262 ECH
Gma07g00507 07 4790034 4791640 Gma16g00203 16 2184881 2186262 GST
Gma19g02425 19 52735398 52737858 Gma16g00203 16 2184881 2186262 PCT
Gma03g02379 03 48911959 48914561 Gma16g00203 16 2184881 2186262 PCT
Gma16g00203 16 2184881 2186262 Gma19g02425 19 52735398 52737858 PCT
Gma16g00203 16 2184881 2186262 Gma03g02379 03 48911959 48914561 PCT