Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00202 ATGGAGGGGATGGCTCCCAATTCATGTGCAAGGCCAGTTGTAGAGAAGAAAGCAAGGCCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACCAATACAAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCAGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCTCTGTGACAGCTTCATCATCACCAAAGGTTCCAGACCTAAACCCACCAAACCACTCAGCTATCTCATCACACAACCCTAAAATAATGCATGGTGGCCAAGATCTCAATCTTGCTTTCCCAGCCATGGAAAAGTACCATCATCATGGCATGTCACCTTATAACGTTGAGATGCAAAACAGTAACACCACCACTACTCATCATCATCACCAAACCTCTCCTTCTTGTTCTGCTCCTCCAGCTAATTCTCTTTCAGCTCTTGAGCTACTTAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTAATTCTTCCTTGATGCCAAACTCAACAAACAACAACAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTTAAACCTAGTCTTAACTTTTCTTCAGTTGATGGGATCGGAAATAATAGATCATATGATCAAGAGAGGGGTGGTGGCAGAGTTTTGTTCCCTTTTGGAGACGTCAAACAGCTTTCTGCTGCTGCAGGTGCTGCTGATCAAGTGGAACAACAACAACAAGGAAATTCAACTGGTTATTGGACTGGAATGATTGGTGAAGGAACATGGTAA 831 0.4428 MEGMAPNSCARPVVEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVSVTASSSPKVPDLNPPNHSAISSHNPKIMHGGQDLNLAFPAMEKYHHHGMSPYNVEMQNSNTTTTHHHHQTSPSCSAPPANSLSALELLRSSMASRGLNPYAPNSSLMPNSTNNNNNALYPSGFPMQEVKPSLNFSSVDGIGNNRSYDQERGGGRVLFPFGDVKQLSAAAGAADQVEQQQQGNSTGYWTGMIGEGTW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00202 276 MobiDBLite consensus disorder prediction 77 95 - -
Gma16g00202 276 MobiDBLite consensus disorder prediction 132 160 - -
Gma16g00202 276 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Gma16g00202 276 MobiDBLite consensus disorder prediction 65 95 - -
Gma16g00202 276 MobiDBLite consensus disorder prediction 130 160 - -
Gma16g00202 276 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Gma16g00202 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 10 271 - -
Gma16g00202 276 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Gma16g00202 276 MobiDBLite consensus disorder prediction 1 22 - -
Gma16g00202 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 271 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00202 Gma-Chr16 2151344 2153631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00202 16 276 C2C2-Dof Transcription Factor Family AT3G61850 48.601 2.18e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma16g00202 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00202 - - gmx:100793115 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00202 16 2151344 2153631 Gma16g00202 16 2151344 2153631 ECH
Gma19g02426 19 52751676 52753714 Gma16g00202 16 2151344 2153631 ECH
Gma07g00506 07 4765181 4767879 Gma16g00202 16 2151344 2153631 GST
Gma19g02426 19 52751676 52753714 Gma16g00202 16 2151344 2153631 PCT
Gma03g02380 03 48931401 48933319 Gma16g00202 16 2151344 2153631 PCT
Gma16g00202 16 2151344 2153631 Gma19g02426 19 52751676 52753714 PCT
Gma16g00202 16 2151344 2153631 Gma03g02380 03 48931401 48933319 PCT