Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00198 ATGAGGCCGATTTTTGCTGGGAACTTGGAGTACGATACTCGTCAATCAGAGCTTGAGCGCTTGTTCTCAAAGTATGGAAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGAAGGCTGTCAGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCGTGATGGATCGAAGGCAAACCAGAAGCCAACAAAAACCCTTTTTGTGATTAACTTTGACCCAATCCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAACCTTATGGGAATGTTCTTCATGTTCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAGACACAAGAAGATGCTACCAAAGCTATAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGGGGGGACAATTATGACAGTCCTAGAAGAGGTGGTTATGAGAGATCACCCAGTCCTTATCACAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGTCTATGATAGGTACAATGGTGGTGGACCAGAcaggcggaggagtcctgattatggcaggcacagaagtcctgattatggcaggcgcaggagtcctgattatggaaggcgcaagagtcctgattatgggaaacccaggagtcctgaatatggTAGATATCGCAGCCGTTCGCCGGTGCGAAGGTCAAGAACATAG 795 0.395 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKAIECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYERSPSPYHRRPSPDYGRPRSPVYDRYNGGGPDRRRSPDYGRHRSPDYGRRRSPDYGRRKSPDYGKPRSPEYGRYRSRSPVRRSRT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00198 264 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 202 IPR029537 GO:0000398|GO:0005681
Gma16g00198 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gma16g00198 264 MobiDBLite consensus disorder prediction 207 256 - -
Gma16g00198 264 MobiDBLite consensus disorder prediction 164 264 - -
Gma16g00198 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Gma16g00198 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Gma16g00198 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Gma16g00198 264 MobiDBLite consensus disorder prediction 164 194 - -
Gma16g00198 264 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 202 - -
Gma16g00198 264 Gene3D - 1 83 IPR012677 -
Gma16g00198 264 Gene3D - 84 173 IPR012677 -
Gma16g00198 264 SMART rrm1_1 92 158 IPR000504 GO:0003723
Gma16g00198 264 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gma16g00198 264 SUPERFAMILY RNA-binding domain, RBD 3 164 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00198 Gma-Chr16 2114532 2116994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00198 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 9.71e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00198 K12893 - gmx:100797709 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00198 16 2114532 2116994 Gma16g00198 16 2114532 2116994 ECH
Gma07g00501 07 4730096 4733064 Gma16g00198 16 2114532 2116994 GST