Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00188 ATGGAATATAGTCAATATACTACTTATTCAGCAGAAGGTGTTGAGGCAGAAACTTACACAAGTAGCTGCACCACCCCATCAAGATCAAAGAAGAGAAACAACAACAACACAAGAAGGTTCAGTGATGAACAAATCAAATCATTGGAGACCATGTTTGAGTCAGAGACAAGGCTTGAGCCTAGAAAGAAGTTGCAGCTTGCAAGAGAGCTTGGATTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAAGAGGGCTAGATGGAAGTCAAAGCAACTTGAGAGAGACTATGGCATACTCCAATCCAATTATAACACTTTGGCTTCACGTTTTGAAGCTCTGAAGAAGGAAAAACAAACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCAATGGAGCCAAGTCAGAGATGCACACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTAAAGCTGAGGGAAAGCCAAGCCCATCATCATTGGAAAGATCAGAACATGTACTTGGTGTTCTGTCTGATGATGACACTAGCATAAAGGTGGAAGACTTTAACCTAGAAGATGAACATGGCCTTCTGAATTTTGTTGAGCATGCTGATGGTTCCTTGACTTCACCAGAAGATTGGAGTGCTTTTGAATCCAATGATCTATTTGGCCAATCAACCACTGATGATTACCAATGGTGGgacttctggtcctga 738 0.4065 MEYSQYTTYSAEGVEAETYTSSCTTPSRSKKRNNNNTRRFSDEQIKSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNTLASRFEALKKEKQTLLIQLQKLNHLMQKPMEPSQRCTQVEAANSMDSESENGGTMKCKAEGKPSPSSLERSEHVLGVLSDDDTSIKVEDFNLEDEHGLLNFVEHADGSLTSPEDWSAFESNDLFGQSTTDDYQWWDFWS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00188 245 MobiDBLite consensus disorder prediction 147 175 - -
Gma16g00188 245 Pfam Homeobox associated leucine zipper 91 133 IPR003106 GO:0006355|GO:0043565
Gma16g00188 245 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Gma16g00188 245 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Gma16g00188 245 Gene3D - 18 93 - -
Gma16g00188 245 Coils Coil 111 131 - -
Gma16g00188 245 MobiDBLite consensus disorder prediction 1 41 - -
Gma16g00188 245 CDD homeodomain 38 92 IPR001356 GO:0003677
Gma16g00188 245 SUPERFAMILY Homeodomain-like 21 93 IPR009057 -
Gma16g00188 245 SMART HOX_1 28 95 IPR001356 GO:0003677
Gma16g00188 245 MobiDBLite consensus disorder prediction 1 31 - -
Gma16g00188 245 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Gma16g00188 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 245 IPR045224 GO:0003700
Gma16g00188 245 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Gma16g00188 245 Pfam Homeodomain 38 89 IPR001356 GO:0003677
Gma16g00188 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 15 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00188 Gma-Chr16 1972038 1972987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00188 39 245 Homeobox Transcription Factor Family AT3G61890 55.189 9.60e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma16g00188 Homeodomain 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00188 K09338 - gmx:100811208 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00188 16 1972038 1972987 Gma16g00188 16 1972038 1972987 ECH
Gma19g02438 19 52859210 52859482 Gma16g00188 16 1972038 1972987 ECH
Gma07g00490 07 4592830 4594486 Gma16g00188 16 1972038 1972987 GST
Gma19g02437 19 52858644 52859033 Gma16g00188 16 1972038 1972987 PCT
Gma16g00188 16 1972038 1972987 Gma19g02437 19 52858644 52859033 PCT