Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00183 ATGGAGGAATTAATCATATCTCCTTCTTCATCTTCCTCTTTGGTCTCTCTTTCCCAAGAAAACCCAACACCAACCCTTCAACAAAAACTTCAATTTCTCCTCCAAAGCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAAGCCTCACACGACGACAATGGCAACCTCTACTTATCCTTCGGAGAGGGCCATTTCCAAGGCACCAAAGAAACTTCCCCAAAATCACTAACCATTCCCACAAAGAATAAGTTCCTGATGAAAACACCCACAAACGATAACATCAACGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGCAGCTTCGCAGTCAACAACAATTCTTCTTCAAACTCCACTTCTTGTTCTTCTTCTTCTTCACTCCCTGGCAAGTCTTTTGCTTTAGGCTCGGTTCTCTGGCAAAACAACAGGCACGAGCTTCAATTCTACAACTGCGAGAGATCCAACGAAGCGCACGTGCACGGGATCGAAACGTTAATTTGCATCCCGACACAAAACGGGGTCGTCGAAATGGGATCCTACGACACCATCAAACAAAACTGGAACCTCGTACAGCACGTGAAGTCTCTCTTCCATACCTCTCCAGATCCGGTTACTATCCAAATCCTCGACGACCACACCATCTCCTTCGCCGACATCGGCATCGTTGCCGGAATCCAAGAAACCAAAAAACGAAAACAAATTACCCAAACAGCACCCAGCAAAAACGACAACTATGTCGACTCCGAACACTCTGATTCGGATTGTCCCACGTTGCCAACCGCCACCACCCCGACAGCCTCGGAGCCGAAGAAAAGAGGGAGAAAGCCTGTTCTCGGACGCGAGACTCCGATAAACCACGTGGAGGCAGAACGACAACGAAGGGAGAAACTCAACCATCGGTTCTATGCCTTACGAGCTGTTGTTCCGAATGTTTCGAGGATGGACAAGGCTTCGTTGTTGTCCGACGCTGTCGCCTACATCAACGAACTGAAGGCGAAGATTGAGGACTTGGAGTCGCAGCAGCCGAGAGACAGTAATAAAAAAATGAAGACAGAAATGACTGACACTCTGGATAACCAGAGTGCCACGACCACATCAACCGTCGTGGATCAAAGCGGGTCTGGATCCAGATTAGGTCTAGGCCCCCTTGGACTCGAGGTTGATGTAAGGATCGTGGGGCCCGATGCCATGGTGAGGGTACAATCAGAAAATGTGAACCACCCTGGGGCTAGGCTAATGGGTGCTTTAAGAGACCTAGAGTTTCAGGTTCACCACGCTAGCATGTCTTGTGTTAATGATCTCATGCTTCAAGATGTGGTCGTTAAGCTTCCCAATGGAATGAGGAGTGAAGAGAGTCTTAAATCTGCTATTATCATGAGGTTGGATCAGTGA 1398 0.4857 MEELIISPSSSSSLVSLSQENPTPTLQQKLQFLLQSQPDWWVYAIFWQASHDDNGNLYLSFGEGHFQGTKETSPKSLTIPTKNKFLMKTPTNDNINDAEWFYVMSLTRSFAVNNNSSSNSTSCSSSSSLPGKSFALGSVLWQNNRHELQFYNCERSNEAHVHGIETLICIPTQNGVVEMGSYDTIKQNWNLVQHVKSLFHTSPDPVTIQILDDHTISFADIGIVAGIQETKKRKQITQTAPSKNDNYVDSEHSDSDCPTLPTATTPTASEPKKRGRKPVLGRETPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEDLESQQPRDSNKKMKTEMTDTLDNQSATTTSTVVDQSGSGSRLGLGPLGLEVDVRIVGPDAMVRVQSENVNHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVVKLPNGMRSEESLKSAIIMRLDQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00183 465 MobiDBLite consensus disorder prediction 253 269 - -
Gma16g00183 465 MobiDBLite consensus disorder prediction 270 294 - -
Gma16g00183 465 MobiDBLite consensus disorder prediction 339 356 - -
Gma16g00183 465 Coils Coil 322 349 - -
Gma16g00183 465 MobiDBLite consensus disorder prediction 231 246 - -
Gma16g00183 465 CDD bHLH_AtAIB_like 281 361 - -
Gma16g00183 465 MobiDBLite consensus disorder prediction 1 20 - -
Gma16g00183 465 PANTHER MYC 1 463 IPR045084 GO:0003700|GO:0006355
Gma16g00183 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 283 332 IPR011598 GO:0046983
Gma16g00183 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 345 IPR036638 GO:0046983
Gma16g00183 465 MobiDBLite consensus disorder prediction 339 377 - -
Gma16g00183 465 Pfam Helix-loop-helix DNA-binding domain 287 332 IPR011598 GO:0046983
Gma16g00183 465 Gene3D - 281 351 IPR036638 GO:0046983
Gma16g00183 465 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 199 IPR025610 -
Gma16g00183 465 PANTHER TRANSCRIPTION FACTOR BHLH14 1 463 - -
Gma16g00183 465 MobiDBLite consensus disorder prediction 230 294 - -
Gma16g00183 465 SMART finulus 289 338 IPR011598 GO:0046983
Gma16g00183 465 MobiDBLite consensus disorder prediction 357 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00183 Gma-Chr16 1882856 1884856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00183 22 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 39.783 4.78e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma16g00183 bHLH-MYC_N 5.9e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00183 - K13422 gmx:100804965 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00183 16 1882856 1884856 Gma16g00183 16 1882856 1884856 ECH
Gma07g00485 07 4511027 4512813 Gma16g00183 16 1882856 1884856 GST