Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00173 ATGTCTCAACAAAGGCAAACTCAGATGGTGGGTGGTAACAACCCTGACCAATATAATGACACAACTTTCACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGAAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAATACCGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGTCAGCCATGAGAGCATGTCAGAATCCATCTCCAGTTATTGATGGTAGGAGAGCAAACTGCAACCTTGCTTCTCTTGGTGCAAGCAAGAATCGACCACCAACTTTTCAGCATGGTGCAGGACGGTTCAGGCCTCCACCTGGACTAGTGACATCCTCACCTGCTTATCATGGTTCTTCATCATCTACATTTTTCCATCAACCCCCTAGGGAATACGCATTTCCTTATTCAGCATACGGATATTCTGGATATTCACAAGACACCTTGTATCCTACGAGTTATTATAATGTCTATGGAGTTCAGCAGTTTTCTTCACCTTACTACCCATCTGCTGGAGCTTCTGGGGCACTAGGGTTGATCCACAATATCTACCCCTTTTATGGTCAATATGCACAGAGTATTCAGGCTCCTGGTTTTGGGGTTCAGTACCCCCAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTGGCAGTGGCAACTACTAGTGCAGTAACAGGAATAGCAGCCACAACTACAACTACAACAACGTCAACAAGTGTGGCAGCAACAGTGGCTGGTACTGCTTCACAAGCCTCTCAAGCAGCTTCTGAACAAAATTCCACATCAACAAGGACAAAGAACTTGCAAGGCTAA 894 0.4497 MSQQRQTQMVGGNNPDQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGASKNRPPTFQHGAGRFRPPPGLVTSSPAYHGSSSSTFFHQPPREYAFPYSAYGYSGYSQDTLYPTSYYNVYGVQQFSSPYYPSAGASGALGLIHNIYPFYGQYAQSIQAPGFGVQYPQMAQFPFLPQHYGSTGILSYPSSVAVATTSAVTGIAATTTTTTTSTSVAATVAGTASQASQAASEQNSTSTRTKNLQG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00173 297 PANTHER BOULE-RELATED 1 277 IPR037366 GO:0003729
Gma16g00173 297 SUPERFAMILY RNA-binding domain, RBD 11 122 IPR035979 GO:0003676
Gma16g00173 297 PANTHER - 1 277 - -
Gma16g00173 297 Gene3D - 1 116 IPR012677 -
Gma16g00173 297 MobiDBLite consensus disorder prediction 276 297 - -
Gma16g00173 297 CDD RRM_RBM24_RBM38_like 24 99 - -
Gma16g00173 297 SMART rrm1_1 25 97 IPR000504 GO:0003723
Gma16g00173 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Gma16g00173 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00173 Gma-Chr16 1775015 1776873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00173 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 5.52e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00173 - - gmx:100788899 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00478 07 4437718 4439809 Gma16g00173 16 1775015 1776873 GST