Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00172 ATGCCGGAAAACATGAGCATATCAGTGAATGGTCAATCTCAAGTCCCTCCTGGCTTCAGGTTTCATCCAACTGAAGAAGAGCTTCTTCAGTACTACTTGAGGAAGAAGGTCTCTTACGAGAAGATTGACCTCGACGTGATTCGTGACGTTGATCTCAACAAGCTCGAGCCATGGGACATACAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACGCGCACCAATCGCGCAACTGCTGCAGGGTTCTGGAAGGCCACTGGCCGCGACAAAGTCATCTACAGCAATGGAAAGAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCGCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCAGCGACACCAATATTGTGTCCAATGTGATGGCGGATGCTGCTCAGGAAGAAGGGTGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGACAGCCCCATAGCTTCCGGGGAAGGTAGAAGGAGCCACATGTTCGACTCGTGCGACGAGGGAGCTTTGGAGCAAATACTTCAGCAAATGGGAAGGGGCTGCAAGGAGGAGAGCAGCTATGAAGGCAACTACAACAGCTATGGAAGGTTTGCAATGGGGTTGAACAATGGCGGCGGCGGTGGATACAATGATAGGTTCATGAAGCTCCCGAGCCTCGAGAGCCCAAAATCCGCAAGCATGGAGAACCACCacaacaccaacaacaactgcaacaataacatgaagagtaataataataataataataataataataataacgggtaccatcccataattccagtaGAGATGGGCACGGACAATGAAGGGACATTCACAACGCACCAGGTGAGTGGTGGTGACCCAAACAACAACAACAACAACAGCAACATTGTTCATCCATTGGAGGTAGGATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGCTGGACCGTTTAGTTGCATCTCAACTCAATGGCCAAACCGATGCCTCTAGGCAACTAGGATGTGCTTTCAACGACCCCACCATGTATTGCACCAGCGTCGACCATCATGATCTTCATCATCAAATCCCCACCCTCCGATCCTCATCAACGTCCGCTAACACACGACCTTCCCCTGCACCCGCATTCATCAACCCCCCAACACAGGACTTCACCAGCGAGATTGACCTTTGGAACTTCACCCGATCCACGTCCTCACTGTTGGCATCCTCCGAACCACTGTGCCACGTGTCCAACACGTCAGTGTAG 1338 0.4746 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTSDTNIVSNVMADAAQEEGWVVCRIFKKKNHLKTLDSPIASGEGRRSHMFDSCDEGALEQILQQMGRGCKEESSYEGNYNSYGRFAMGLNNGGGGGYNDRFMKLPSLESPKSASMENHHNTNNNCNNNMKSNNNNNNNNNNNGYHPIIPVEMGTDNEGTFTTHQVSGGDPNNNNNNSNIVHPLEVGSGGGGLTNWAALDRLVASQLNGQTDASRQLGCAFNDPTMYCTSVDHHDLHHQIPTLRSSSTSANTRPSPAPAFINPPTQDFTSEIDLWNFTRSTSSLLASSEPLCHVSNTSV 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00172 445 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Gma16g00172 445 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 394 - -
Gma16g00172 445 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 394 - -
Gma16g00172 445 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Gma16g00172 445 MobiDBLite consensus disorder prediction 389 411 - -
Gma16g00172 445 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Gma16g00172 445 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00172 Gma-Chr16 1745295 1747387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00172 1 444 NAC Transcription Factor Family AT2G46770 52.203 6.54e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma16g00172 NAM 4.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00172 - - gmx:100793308 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00172 16 1745295 1747387 Gma16g00172 16 1745295 1747387 ECH
Gma07g00477 07 4398672 4401245 Gma16g00172 16 1745295 1747387 GST