Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00165 ATGGTGGGTGGTAACATCAATTCAAGGCAATACAATGATACAACTTCTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGGGACACAATGAGAAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTCATCACAGACAAGAACACTGGGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAACGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCAGCTATTGGTGCAAACAAGAATAGGACACAGGCTCCACAACATGGTCTCAATCAAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTTTCATGGCCCTTCCTCTACATTTGTCAATCAAAACATTGGGCAATACACATTTCCTAATTCAAGTTTTGGCATATATACTGGATATTCACAAGACACAATGTACCCCATGAACTGCTATGGGATATTTGGAGGTCAACAGTTATCAACTTATTATCCCTCCAATGGGGCATCTGGGCAAGTGGGATTAGTCCATAACATTTACCCTTTTAGTGCCCATTATCCATACAATAGCCAGGCTCATGGTTTTGGTGTCCAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGGCAATGCCAATTACTAGTGCAGTtacaacaacagcaactacaacaacaacaacAGAGGCATTAAGAACAAGTGTGGGTGCTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCAGCTGAATCTCTACATAGATAA 837 0.411 MVGGNINSRQYNDTTSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGKSKGYGFVTFKDPEAAMNACQNPSPIIDGRRANCNIAAIGANKNRTQAPQHGLNQAAPGVLASPAFHGPSSTFVNQNIGQYTFPNSSFGIYTGYSQDTMYPMNCYGIFGGQQLSTYYPSNGASGQVGLVHNIYPFSAHYPYNSQAHGFGVQYPQMMQFPILPRHYGSAGILALPSSMAMPITSAVTTTATTTTTTEALRTSVGASQTAGTTSEQNSSAESLHR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00165 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Gma16g00165 278 PANTHER - 1 255 - -
Gma16g00165 278 SUPERFAMILY RNA-binding domain, RBD 5 101 IPR035979 GO:0003676
Gma16g00165 278 MobiDBLite consensus disorder prediction 245 278 - -
Gma16g00165 278 CDD RRM_RBM24_RBM38_like 17 92 - -
Gma16g00165 278 SMART rrm1_1 18 90 IPR000504 GO:0003723
Gma16g00165 278 PANTHER BOULE-RELATED 1 255 IPR037366 GO:0003729
Gma16g00165 278 Gene3D - 5 109 IPR012677 -
Gma16g00165 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00165 Gma-Chr16 1667521 1669228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00165 13 93 C2H2 Transcription Factor Family AT2G19380 40.741 2.66e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00165 - - gmx:100786226 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00165 16 1667521 1669228 Gma16g00165 16 1667521 1669228 ECH
Gma07g00470 07 4325877 4327641 Gma16g00165 16 1667521 1669228 GST