Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00161 ATGCCACCTAACAGTAACACTCTTTTTCACACTCACGCCTTCGTTGTTACACCCTCTTCTTCTTACTCTTCCGTGCACACCCTGAAACTGCAAAAGCCTCAAGTGAAACGATTCGTTTTGCTGTTCGCATATCCAAGGCGTTCGCGCACGTTTCTAGAACCTTCTACTTCTTCTTCTTCTTTCTCTCCTGTGAGGAAAACTAAGGAAGTGGCTGAAGAATATGTTTACCCTCCCGAAAACGATGACGTTTTGGAGGACGAAGAAGAACGAGAGAAGAGGCTTGGAAAAGCGTGTGAAGTGTACGTGTGCAACCTGCCCCGAAGCTGTGACGCAGCATACTTACTTGATATGTTCAGGCCTTATGGAACCATTTTATCTATCGAGGTTTGCCGGAATGCTGAGAATAATGAAAGTAAGGGGTGTAGCTATGTGACACTGGGATCCATACACTCAGCAAGAAATGCAGTTGCTGCATTGGATGGATCAGATGTTGGTGGGTGCGAATTGCGGGTTAGATTTTCAATTGAGATGAATTCTAAAAGGAGGAGTTTTAACAAAATGAACTCTTCAACCAAGAGAATTTCATATTATGAATCTCCTCATAAGCTGTATGTTGGCAATCTTGCAAAGACTGTTAGACCCGAACAGTTGAGAGATCTCTTTTGCAGATTTGGAAATATAGAATTTTATGGTCGTACACTAATCGTTAAAGAGGGTGTAGAGAGGAGTGAGGACTGA 738 0.4295 MPPNSNTLFHTHAFVVTPSSSYSSVHTLKLQKPQVKRFVLLFAYPRRSRTFLEPSTSSSSFSPVRKTKEVAEEYVYPPENDDVLEDEEEREKRLGKACEVYVCNLPRSCDAAYLLDMFRPYGTILSIEVCRNAENNESKGCSYVTLGSIHSARNAVAALDGSDVGGCELRVRFSIEMNSKRRSFNKMNSSTKRISYYESPHKLYVGNLAKTVRPEQLRDLFCRFGNIEFYGRTLIVKEGVERSED 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00161 245 Gene3D - 183 230 IPR012677 -
Gma16g00161 245 SUPERFAMILY RNA-binding domain, RBD 98 230 IPR035979 GO:0003676
Gma16g00161 245 PANTHER OS02G0815200 PROTEIN 33 227 - -
Gma16g00161 245 CDD RRM_SF 100 172 - -
Gma16g00161 245 CDD RRM_SF 203 228 - -
Gma16g00161 245 SMART rrm1_1 99 172 IPR000504 GO:0003723
Gma16g00161 245 Gene3D - 46 182 IPR012677 -
Gma16g00161 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Gma16g00161 245 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 33 227 - -
Gma16g00161 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00161 Gma-Chr16 1634665 1636313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00161 90 243 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 5.41e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00161 - - gmx:100792560 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00161 16 1634665 1636313 Gma16g00161 16 1634665 1636313 ECH