Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00158 ATGGATGAGTTGAACTGCGCGATGACGACGACGACGACGGAGAATAGCAATGCGGAGCTGGTTCAATGGGAGAGGTTTCTGCCGCGGATGGTGCTCAGAGTGCTGCTTGTAGAAGCTGATCATTCCACGCGCCAAATCATCGCCGCGCTTCTTCGCAAATGCAGTTACACggTTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAGGCACCTGAGCTAGATCTCATATTAACAGAAGTGGAGCTACCAGCAATATCTGGATTTGCTCTTCTTTCTTTAATCATGGAGCATGACATTTGTAAAAGCATTCCTGTCATAATGATGTCTTCTCATGATTCGGTTAACATGGCGTTGAAATGCATGTTAAACGGGGCAGTTGATTTTCTTATAAAACCCATTCGCAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACACTATTATCACTCCTACTCAAAATACAACATTTTCACCGAAAAAACTTAAAACTGCCTCAGAAGACAATTCTGCAAGCAATAAATCTAATGGTTCTGTGGCTTCCTCAAAGAAAAACAATGAATACAGTGAGAGATTAAGTGAGGCTCAAgatgtgccccagCTGGAAAGTTCTAAACTGAACAAAATTGATATGGTGGACCATGAAAAGTTTGCCAAATTTGAAAGGAAATCAGCTAAGCATAATGATGAAACAGAGGATAAATCAATTACAATTGTATCAGAGGCTGCAAGGTGTGACAAAAGTTTTGAATTGACAGATTTAATGCTAGAACAAGACTGTGGTGTTGCTGAACCTGAAACTGAAAACGAGGATGAAATCTTAAAATCTGAGTTAGGCAGAGACAATTCTCATGTTTCTATATTGCATGGATGCAATGCTGAGCAGGTGAAACCTTCTAAAGGAGCTATTGACTTGATTGCCACATTTGGAAATCTTCCAAAGCACCCTAATGAAAACTGTAGTCTCAATGGTGGTAATACAACCAAGTTTGATTGTGAAACGCAATTGGAACTTTCCTTAAGAAGTGATTTTCCTGGCAGCTCAGGTAAACAAGCAAGTGAATCAACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGGTACAGTAATAGTAAATTGTTGCAGCCTCTTTTTTCACCACCATCGATTACATCTCCTAAAGTAAACTGGCTCAATTGGGATTCTCATGAATGCCTTAAATTATCTGGAAATTGTCAGTATGACGACTCAAATCAGAACCTGGAGAATATGATCAGTACAGTCATTGGTCAGTATGGACTCTTACCTGTTTCAGGAGTTATCTCCAAGCTTAAGTCTGAGGGACATGGTCATGTTTTTACTTCTGTTTTCTATGCACAATCTGGCATTCACCCCATGTTGAGTCCAAAACCAGTCTGCCAGAATGAGAGTTCTCCCTTTCCCACAAGTACCTCCTCCCAGTCCAATCCTGAAAGTCACTGCTCAGATCAACCTCATGACTGTTCCAATGATGCTACTTGTCTTGATCAAAATGTAAAGGATAATACTGATTCAGATCACGCAAGGCATGAGTCTCCTGCTGCTGATCAGAGTGCTGGTAATAATTTATGCCATGATGCTGCAAATCATGTTAATAGTAGTGCATATGGAAGCATGGACAGTGGAAATGATGGACATGCTACTTCAGCTATAGTATCCAAGAACACCTCAGATGGTTTCAGTGATAGTGGTTGTCATAATTATGATGGATTTAGAGTGACAGATTCTCATCGCTCCAGTCAAAGAGAAGCAGCACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGGGGCAGTTTGTACGACAACATAATCATCCATTCGCTGAGGCTGGTGGTGATTCATGA 1968 0.409 MDELNCAMTTTTTENSNAELVQWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWETLKKKAPELDLILTEVELPAISGFALLSLIMEHDICKSIPVIMMSSHDSVNMALKCMLNGAVDFLIKPIRKNELRNLWQHVWRRHTIITPTQNTTFSPKKLKTASEDNSASNKSNGSVASSKKNNEYSERLSEAQDVPQLESSKLNKIDMVDHEKFAKFERKSAKHNDETEDKSITIVSEAARCDKSFELTDLMLEQDCGVAEPETENEDEILKSELGRDNSHVSILHGCNAEQVKPSKGAIDLIATFGNLPKHPNENCSLNGGNTTKFDCETQLELSLRSDFPGSSGKQASESTEESQRLNHSNTSAFSWYSNSKLLQPLFSPPSITSPKVNWLNWDSHECLKLSGNCQYDDSNQNLENMISTVIGQYGLLPVSGVISKLKSEGHGHVFTSVFYAQSGIHPMLSPKPVCQNESSPFPTSTSSQSNPESHCSDQPHDCSNDATCLDQNVKDNTDSDHARHESPAADQSAGNNLCHDAANHVNSSAYGSMDSGNDGHATSAIVSKNTSDGFSDSGCHNYDGFRVTDSHRSSQREAALVKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQHNHPFAEAGGDS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00158 655 SUPERFAMILY CheY-like 32 159 IPR011006 -
Gma16g00158 655 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Gma16g00158 655 ProSiteProfiles CCT domain profile. 601 643 IPR010402 GO:0005515
Gma16g00158 655 PANTHER PRR RESPONSE REGULATOR 7 199 - -
Gma16g00158 655 Pfam CCT motif 601 643 IPR010402 GO:0005515
Gma16g00158 655 MobiDBLite consensus disorder prediction 518 545 - -
Gma16g00158 655 MobiDBLite consensus disorder prediction 349 371 - -
Gma16g00158 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 199 IPR045279 GO:0009736
Gma16g00158 655 MobiDBLite consensus disorder prediction 477 506 - -
Gma16g00158 655 Gene3D - 30 277 - -
Gma16g00158 655 MobiDBLite consensus disorder prediction 162 208 - -
Gma16g00158 655 PANTHER PRR RESPONSE REGULATOR 201 652 - -
Gma16g00158 655 MobiDBLite consensus disorder prediction 475 506 - -
Gma16g00158 655 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Gma16g00158 655 SMART REC_2 32 147 IPR001789 GO:0000160
Gma16g00158 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 201 652 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00158 Gma-Chr16 1620919 1625607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00158 564 643 Response Regulator Gene Family AT5G24470 56.250 1.11e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gma16g00158 Response_reg 1.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00158 K12130 - gmx:100802674 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00158 16 1620919 1625607 Gma16g00158 16 1620919 1625607 ECH
Gma19g02455 19 52968678 52973760 Gma16g00158 16 1620919 1625607 ECH
Gma07g00465 07 4276273 4281521 Gma16g00158 16 1620919 1625607 GST