Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00149 ATGGAGTTGATGCAAGAAGTGAAAGGGTACTCTGATagcagagaggaggaggaggaggaagagggagcagcagaagaagaaagcagccGGTTGTTACACCAGCACCAGGATGCAGCAGGTTCCAATTTCATCATCAACAACAATCAACATCATCAACATCACCACACAACAAAGCAGCTAGATTTCATGGACTTGTCACTTGGTAGCAGCAAGGATGAAGGGAATTTGCCAGGATCTTCTTCTTCTGTCTATGCTCATCATCATGCAGCAAGTGGTAGTTCTTCTGTCAATGGTAACAACAACCTGCAGCAACAGCAACAGCCTGCTGAGAAGGAGCACATGTTTGATAAAGTAGTGACACCAAGTGATGTGGGGAAGCTGAACAGGTTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGTCTGTTGCTGAATTTTGAGGACAGGAATGGAAAGTTGTGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGTTGGAGCCGTTTTGTCAAAGAGAAGAAGCTTGATGCGGGTGACATTGTTTCCTTCCAGCGTGGTGTTGGAGAATCGTATAGGCATAGGTTGTACATAGATTGGAAGAGAAGGCGTGATCATCATCATCATCACCATCATGGCCCTGTCGACCCTTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCATCACTTAATGTCCATCAGATGGGGTGCCACTGACAGATTGTACTCCCTCCCTTCCCCAACCCCACCACGCCACCATGACCATTTGCAACATCAACAACCCCTCAATTACAACAACAACACCATGTATCATCCCTTTCATCACCATGGTGGTGGAAGTGGAATTAATGGTACTACTCATCACTACAACAATTACTATCATGAGATGAGTAGTACTACTAATACTACCACTTCAGGATCTGGCTCAGTCTTTTAcctcaggtcaacacccccatcaatgccattggctgatcaccaaaccttgaacacaagacaacaacagcagcaacagcaacaacaacaacaacaagagggaggtggcaatgtttcactttcTCCTATGATCATTGATTCTGTTCCAGTTGCTCACCACCTCCATCATCATCATCATCAACATCAACATCAACACCATGGTGGCAAGAGTAGTGGTTCTAGTAGTCCTAGCACTGCAGGGAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCAACAACATCAGAAGACCACCCCAAATGCTTCAGCTTGCTGTCCTCATCTTCATCAATGGCTAATTCCAATTCTTCACTACCACCACTTCAGCTTTTGAGGGAAGACACACTTTCATCATCAGCAGCAGCAGCAGCAAGGTTTGGAGATCAGAGAGGAGGAGTAGGGGAACCTTCAACTTCAATCTTTTTTGATCTGGACCCTTCTTTGCAATACCGGAAGCGATAA 1503 0.3999 MELMQEVKGYSDSREEEEEEEGAAEEESSRLLHQHQDAAGSNFIINNNQHHQHHHTTKQLDFMDLSLGSSKDEGNLPGSSSSVYAHHHAASGSSSVNGNNNLQQQQQPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGESYRHRLYIDWKRRRDHHHHHHHGPVDPSTTLFTPFFLPNQPHHLMSIRWGATDRLYSLPSPTPPRHHDHLQHQQPLNYNNNTMYHPFHHHGGGSGINGTTHHYNNYYHEMSSTTNTTTSGSGSVFYLRSTPPSMPLADHQTLNTRQQQQQQQQQQQQEGGGNVSLSPMIIDSVPVAHHLHHHHHQHQHQHHGGKSSGSSSPSTAGKRLRLFGVNMECASSTTSEDHPKCFSLLSSSSSMANSNSSLPPLQLLREDTLSSSAAAAARFGDQRGGVGEPSTSIFFDLDPSLQYRKR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00149 500 CDD B3_DNA 113 214 IPR003340 GO:0003677
Gma16g00149 500 MobiDBLite consensus disorder prediction 383 397 - -
Gma16g00149 500 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 448 IPR044800 GO:0003700
Gma16g00149 500 SUPERFAMILY DNA-binding pseudobarrel domain 111 219 IPR015300 -
Gma16g00149 500 Coils Coil 7 34 - -
Gma16g00149 500 MobiDBLite consensus disorder prediction 72 109 - -
Gma16g00149 500 MobiDBLite consensus disorder prediction 319 411 - -
Gma16g00149 500 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 59 448 - -
Gma16g00149 500 MobiDBLite consensus disorder prediction 1 31 - -
Gma16g00149 500 MobiDBLite consensus disorder prediction 71 112 - -
Gma16g00149 500 Pfam B3 DNA binding domain 115 218 IPR003340 GO:0003677
Gma16g00149 500 Gene3D - 109 229 IPR015300 -
Gma16g00149 500 SMART B3_2 115 220 IPR003340 GO:0003677
Gma16g00149 500 MobiDBLite consensus disorder prediction 319 369 - -
Gma16g00149 500 ProSiteProfiles B3 DNA-binding domain profile. 115 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00149 Gma-Chr16 1486700 1488919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00149 106 426 RAV Transcription Factor Family AT2G46870 44.785 2.68e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma16g00149 B3 7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00149 - - gsj:114390989 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00149 16 1486700 1488919 Gma16g00149 16 1486700 1488919 ECH
Gma07g00452 07 4143331 4145604 Gma16g00149 16 1486700 1488919 GST