Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00137 ATGACTATGATGAGCAGCAGCAACAACAACGTTGGAGAATTTGGAGACACCACTCTGACCAAGGTTTTTGTTGGGGGCTTAGCTTGGGAGACTCCGAAGGATGCCCTTAAAGACCACTTTGAGAAGTATGGTCAGATCCTTGAAGCTGTCATCATTTCCGATAAGCACACTGGCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAGGAGGCTGAGGCTGCCAAGAAGGCTTGTGAGAATTCAACAACTCTCATTATCAATGGCCGTCGAGCGAATTGCAATCTTGCTTTCCTAGGTGCTCGTCGCCCAAGGTCTTCTTCCAATGTTTCACCTCCTCCACCGCAAGCACAAGGGGGATCCAACGGTGGAATAGTGAAGAATGTTAACAATGCATCAGGTCCACCACCAGCCATTAATCACGTGCAGCCATATTATTATCCAGTGAGGACAACTGCTCTGCCATTCCATAATCACACTCTTCCTTTCTATGGGTATGCGCCTACCTACATTGTTACTGACGTAAACTACAATTACAATCAGAATCAGAAACTGTGCTATGGTAGCGGTGGGGCCTACATGAATGGGCAGCATGTGTACCCGAGGCAGGCTATTGTGGGCGGCAACACACTGATGCCAATGTATCCTCTCTATCAGTATCACCATCCAACGGAGACCATTGGCGTGCCAGCTCATCACAACTTTTATCAAACGGCACCGTGGGTCCCAATGACCATCATGTCCAAGCCATCGTCTATCGTTCCTCACACAGGTACAGTTGGCACAGGTGAGTGTTTTAAAAGGGTTGTCTGA 810 0.479 MTMMSSSNNNVGEFGDTTLTKVFVGGLAWETPKDALKDHFEKYGQILEAVIISDKHTGKSKGYGFVTFKEAEAAKKACENSTTLIINGRRANCNLAFLGARRPRSSSNVSPPPPQAQGGSNGGIVKNVNNASGPPPAINHVQPYYYPVRTTALPFHNHTLPFYGYAPTYIVTDVNYNYNQNQKLCYGSGGAYMNGQHVYPRQAIVGGNTLMPMYPLYQYHHPTETIGVPAHHNFYQTAPWVPMTIMSKPSSIVPHTGTVGTGECFKRVV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00137 269 CDD RRM_RBM24_RBM38_like 20 96 - -
Gma16g00137 269 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 3 258 - -
Gma16g00137 269 SUPERFAMILY RNA-binding domain, RBD 16 122 IPR035979 GO:0003676
Gma16g00137 269 SMART rrm1_1 21 94 IPR000504 GO:0003723
Gma16g00137 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Gma16g00137 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 90 IPR000504 GO:0003723
Gma16g00137 269 MobiDBLite consensus disorder prediction 102 132 - -
Gma16g00137 269 Gene3D - 4 110 IPR012677 -
Gma16g00137 269 PANTHER GEO13361P1-RELATED 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00137 Gma-Chr16 1343414 1346147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00137 16 169 C2H2 Transcription Factor Family AT2G19380 29.747 2.57e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00137 - - gmx:100813699 543.117