Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00116 ATGGCAATGGGTTCTCTGGAATCGCATGAAGCAAAGTTGCAGAGATTTCTTATTCTTGAACCACTACATTCCAATGGAAAATCTTTAGAAAGAACAACAGGGGAAGATGTGAATCCCGAATCCGCATCATCGCTTCCCTCAATCTTCTTTCTTGTTCAATCTTCATCTTCCAATCCCAATCCATCCATCGCGTTAGGGTTTTCACAGTTCCAGTTCCCTTCTCCCGCACCGCCATTGCCGCTCCCTTTTATCCTCGATCGGCAACTCTCTGCGTCCAAGCGATGCAACGCACCGTCGCAATTCCTTCGTAGTTTCGCGAAACGGCGTTTTTCTTCGGTGGAGGAAACTTCGGAACTGAGCCGCGTCGGAGTCCAATCTTCCGCGCTCGGAATTTCACCGTCGTTTTTTTTCTCTCTCAGTGTTCGCGTGTGTGTCTGCTCGGTGCTGCGTTTTGCTCGAACGATGTTTCCGTTTCATTCTCAAGGAACTCCGAAACACACTTGCACTCTTCTCGCTGTGACCTGCAGAACAAGTTCCGCTGAGCACAAACTCTCACATGCTCAGCGCACATATCCTTTCCCTGAGTTAGTTTCCGCGGGGCGTCTTGAGGTTCAAACTCTTTGCAGTCCGGAGAAGGAACAGTTTCGGAAAGTTCTGGAGTCGTTTCAACCGAATTTTGTTTACTTGCGAGGAGACCAGCTAGAGAATGGGGAAGTAGGTTCGCTGGTTTGGCAGGGTGTGGAATTATCCACTTGTGAAGATATAACAGAGCTCTTTGGTTCCACATTGCCAACGGCTGTTTATTTAGAAATACCAAATGGAGAAAGTTTTGCAGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATACCTTCTCTTGTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTAGTACAAAGTTCATCTACACATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCAAAACAATCAAGTACTTCCTTCTGATAGCGATGATGCTAGTAGTGAGATGGGGCCACACCTTCTTGGCGACTGTCTCAAAATCAATGTCGACCCTCCAGAGATCGATGAAGAGGATGATGACGAAAGTTCCTCAGGAAGTTTGCCTGCCATAAAGATACATGAGGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCGACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCGCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCCGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCACGCACAACTCAACAATGAGGGAAACAAAGAGAACATCTGTGAACCTCGCAGATCTGCTTCTATTGCCTGTGGAGCATCTGTATTTGAAATTTGCATGAAGCTACCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAACGCTTACTGTTCTTCTATCAAAACTGTGAGAAAGATAGCTGTACAAACAAAAATAATATAATTTTTAGCAGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTACTAGGAAAAGGTGTGAACCAAGACAAGAGGCTAGCCCTGGTCTTCATGAAGGTGTCTTTGCAGGGCAGGGTGGTGTTTGTAAATTAAATGAAGAGGAAAAGGACAGAAAAATTGTCAATGGGATTAGCATGCCGTTAACTCCTGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGTCGCCATAGAATGACACCTTTTTGTGGGCCTTCTGAGACAGATGGTTTTGATGGCACTCAGGTAGAGGCTATTTTGCCACTTGTTGCCCCTACGAAGCGTACTAGTATTGGATCAACATCTGGAACACACAGAAAATCATTTTCAAGTGCAGCTCAGTCTAAGCAGGTTATTTCATTGAACCCATTGCCTCTTAAGAAACATGGTTGTGGTAGAGGCCCAGTACAGACATGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACATAATAGACTGATTCCTCAAGGAGGGCTTACCGAGTTCCCTGATGCCATACTCAATGGAAAACGCCTTGATCTCTACAATCTATATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACAACAACCAATAGAATGACTGGTGTTGGGAATACTCTCAAGCGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAATGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGCTAATGGGTATTCTCAAGGGTCAATGTCTTCACGACCCCTTTGA 2811 0.4436 MAMGSLESHEAKLQRFLILEPLHSNGKSLERTTGEDVNPESASSLPSIFFLVQSSSSNPNPSIALGFSQFQFPSPAPPLPLPFILDRQLSASKRCNAPSQFLRSFAKRRFSSVEETSELSRVGVQSSALGISPSFFFSLSVRVCVCSVLRFARTMFPFHSQGTPKHTCTLLAVTCRTSSAEHKLSHAQRTYPFPELVSAGRLEVQTLCSPEKEQFRKVLESFQPNFVYLRGDQLENGEVGSLVWQGVELSTCEDITELFGSTLPTAVYLEIPNGESFAEALHLKGIPYVIFWKNTFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLPSDSDDASSEMGPHLLGDCLKINVDPPEIDEEDDDESSSGSLPAIKIHEDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLVHAQLNNEGNKENICEPRRSASIACGASVFEICMKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQNCEKDSCTNKNNIIFSSPPGWLKPPPPTRKRCEPRQEASPGLHEGVFAGQGGVCKLNEEEKDRKIVNGISMPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGTQVEAILPLVAPTKRTSIGSTSGTHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVANGYSQGSMSSRPL 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00116 936 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 851 920 IPR013083 -
Gma16g00116 936 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 159 926 - -
Gma16g00116 936 SUPERFAMILY ARID-like 750 865 IPR036431 GO:0003677
Gma16g00116 936 SMART bright_3 751 855 IPR001606 GO:0003677
Gma16g00116 936 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 159 926 IPR042293 -
Gma16g00116 936 CDD ARID 752 850 - -
Gma16g00116 936 SUPERFAMILY FYVE/PHD zinc finger 846 914 IPR011011 -
Gma16g00116 936 ProSiteProfiles ARID domain profile. 750 854 IPR001606 GO:0003677
Gma16g00116 936 MobiDBLite consensus disorder prediction 600 625 - -
Gma16g00116 936 Pfam ARID/BRIGHT DNA binding domain 753 850 IPR001606 GO:0003677
Gma16g00116 936 SMART ARID_2 747 850 - -
Gma16g00116 936 Gene3D - 746 850 IPR036431 GO:0003677
Gma16g00116 936 CDD PHD_ARID4_like 860 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00116 Gma-Chr16 1142176 1151715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00116 158 925 ARID Transcription Factor Family AT3G43240 60.696 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma16g00116 ARID 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00116 - - gmx:100816540 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00422 07 3831009 3844136 Gma16g00116 16 1142176 1151715 GST